PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P10530_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family LBD
Protein Properties Length: 1370aa    MW: 152288 Da    PI: 8.132
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P10530_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260115.43.5e-367818821101
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                            +C aCk+lrrkC ++Cv+a +f++eq p++fa+vhk+FGasnv+kll+ +p  +++da+ +++yeA+ar+ dPvyG+v++il++qqq+
  GSMUA_Achr9P10530_001 781 PCGACKFLRRKCLPGCVFAAHFASEQgPARFAAVHKVFGASNVSKLLSIVPAGRQHDAVVTICYEAQARLADPVYGCVSTILAMQQQV 868
                            7***********************9999************************************************************ PP

                 DUF260  88 eqlkaelallkeel 101
                            + l+ael++++++l
  GSMUA_Achr9P10530_001 869 AALQAELSMVHSQL 882
                            *********99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF520584.42E-3329304IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.103.7E-3835307IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS514507.627154176IPR001611Leucine-rich repeat
PROSITE profilePS514505.402177199IPR001611Leucine-rich repeat
PROSITE profilePS514504.609222243IPR001611Leucine-rich repeat
PROSITE profilePS514505.048270289IPR001611Leucine-rich repeat
SuperFamilySSF561125.27E-44409704IPR011009Protein kinase-like domain
Gene3DG3DSA:3.30.200.201.2E-15411484No hitNo description
PROSITE profilePS5001125.616428704IPR000719Protein kinase domain
SMARTSM002207.8E-10428705IPR000719Protein kinase domain
PfamPF000691.3E-23431699IPR000719Protein kinase domain
Gene3DG3DSA:1.10.510.107.5E-24485710No hitNo description
PROSITE profilePS5089121.497780882IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-36781879IPR004883Lateral organ boundaries, LOB
PfamPF102259.3E-4510371267IPR019358NEMP family
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0004672Molecular Functionprotein kinase activity
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1370 aa     Download sequence    Send to blast
MAVGSYPCCL LILSMILILT PCAYQLQPAE VLSLLRIKRL LNYPAILSRW NVDTDFCSYE  60
ANPYVTIICY EESITQLHIT GNKSAPPLPR SFSMTLLFAT LYRLPNLKVL SLTSLGLWGP  120
LTGKISRLSS LEIVNMSTNY LYGAIPKQVS RLTNLQTLIL DHNILSGELP DLNSLSNLQV  180
LDLENNYFGP RFPSLGRKVV TLVLRKNRFS GGLPAEVNTY YLLEHLDISF NRYTGPFPAS  240
LLSLPSIHYL SISGNRFTGM LLQSMSCNGE LEYVDLSSNL LTGNLPTCLI SDSKNKVTLY  300
SANCFATEDH SQHPLSFCQN QALAVGIIPH KENKVSGAKA TLMIGITGGI FGSIFLGMII  360
FFSLKKATMK PALNKSQRSL AEHASVGYSS QLLPDASYIL QTMKLGELGV PPYRSFSLEE  420
LEAATNNFDT SSFMGEGSHG QMYRGKLQDG SLVAIRCLKL KKALNSQNFS RHIELISKLR  480
HHHLVSALGH GFEYYLDDSS VSRLFIVFEF VSNGTLRSNI SEGVPGETLT WTQRISAAIG  540
VVKGIQFLHG GMVPGLFAND LKITNVLLDE HLVAKISSYN LPILAEHMKC EMMVGSSSSG  600
LREPNERTKY MDKIDIHDLG VILLEIITGR PIIFNSEVVN IMKNQLQESI AADGIARMSF  660
VDPVIINACC DESLKTVMEI CLRCLSKEPT QRPSIEDVLW NLQFAAQVQE SWRSTPPSRA  720
QRGAQLFFNP GLDGCTTMDP DGGGEKESGE KPNRRAARVD AGKRAAAVTP GSPREGAAGS  780
PCGACKFLRR KCLPGCVFAA HFASEQGPAR FAAVHKVFGA SNVSKLLSIV PAGRQHDAVV  840
TICYEAQARL ADPVYGCVST ILAMQQQVAA LQAELSMVHS QLLNTRLAED EKPVELHFLE  900
LVCLLLQQPF SWCHYLATNL LFVAEINLED PVLEFGSPPY AGQSCHRVRL TGMSRLNLKS  960
YASSVRVALK ISDSTDGWLG RNIRLCFHRN TSIVVCQCEV SQWESFLRNE RNSMISPYES  1020
GFIDVKINKE TSTFFSVALE EEFHLWRLGC LGFGLLIFLI APGISNWMPF YYSSSMILGV  1080
FLLVLILLFQ AMKLVPISRR KIIYIAFYGS LLGLGSLIRN YFSRMITFLL VSCGFSEESY  1140
NLVSLVLLGG IIFAGTFLGY WSARKFVLSE DGCVDSGIAQ FVKWTLRLIG IVSILQSTID  1200
VPLGLLALAT CCTFSYLVHS KKWHRRSNNN GSLWQRRPKQ AENLSFASKG TRMSFWGGST  1260
SYSPSPNAAG KGYSFSKRVK QRDQDYYSTY HNVPRRKFSE EEWEKFTRQS TSAALTEWAS  1320
TPEVIKWIGN NAHRMRLIEE DHNEDDTSES DSPKETVPRN ESEPSFFTWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-407658891118LOB family transfactor Ramosa2.1
5ly0_B7e-407658891118LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417091.10.0PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770
RefseqXP_009417092.10.0PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770
RefseqXP_018686774.10.0PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770
RefseqXP_018686775.10.0PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770
TrEMBLM0TZ620.0M0TZ62_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P10530_0010.0(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-45LOB domain-containing protein 20