PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P10740_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 256aa    MW: 28103.7 Da    PI: 10.1901
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P10740_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1016.9e-32190247359
                            -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYegeHnh 
  GSMUA_Achr9P10740_001 190 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPTMLIVTYEGEHNHA 247
                            9************************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105339.0E-18141186IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.3E-34176248IPR003657WRKY domain
PROSITE profilePS5081129.998183246IPR003657WRKY domain
SuperFamilySSF1182903.27E-27186247IPR003657WRKY domain
SMARTSM007749.7E-39188248IPR003657WRKY domain
PfamPF031061.9E-27190246IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEEVEKAHRA AVESCHRVLN LLSQSQDQVQ STILLAETGD AVSRFKRVVS LLSNSSGHGR  60
VRIVNKVQSS SNHNLFSDNQ LNQFGSQASS SSHHTPSAST ARSFLSSLSM DGSVASFDGK  120
SFHLIGGPAS SDPVNLHPPP KRRCVCRGED GNGKCATSGR CHCSKRRKLR VKRSIKVPAI  180
SNKLADIPPD EYSWRKYGQK PIKGSPHPRG YYKCSSMRGC PARKHVERCL EDPTMLIVTY  240
EGEHNHAKLL TQSAQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-21181246771WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417115.11e-147PREDICTED: probable WRKY transcription factor 21
RefseqXP_009417116.11e-147PREDICTED: probable WRKY transcription factor 21
RefseqXP_009417118.11e-147PREDICTED: probable WRKY transcription factor 21
RefseqXP_009417119.11e-147PREDICTED: probable WRKY transcription factor 21
SwissprotO043368e-76WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLM0TZ830.0M0TZ83_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P10740_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.11e-75WRKY DNA-binding protein 74