PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P11020_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 258aa    MW: 28029.4 Da    PI: 7.2754
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P11020_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.7e-12140187455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h+ +Er RR++i +++  L++l+P +    +k   Ka+iL + ++YI+ Lq
  GSMUA_Achr9P11020_001 140 SHSLAERARREKISERMKILQDLVPGC----NKVIGKASILDEIINYIQALQ 187
                            8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.00E-11134191No hitNo description
SuperFamilySSF474593.27E-18134201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-19136204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.431136186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-9140187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-12142192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDRASLSSLG PEMCPFPMVG APPPLGPVIR RLGGGAPAEE SAVTDQSGRN SKGRRRKRDS  60
VASDDESSKL ASTSGGQGLM DNETKRLKAM HTNEIGSIKT EVEASSGNGN KIIDQNPGTS  120
EPPKHDYIHV RARRGQATDS HSLAERARRE KISERMKILQ DLVPGCNKVI GKASILDEII  180
NYIQALQHQV EFLSMKLEAV TSHVNSGFEF FPHKDFGAQA YDTASSLPFS SQAAREYEQG  240
SATEWLHMQV GGALERVT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417147.10.0PREDICTED: transcription factor bHLH79-like isoform X1
SwissprotQ69WS31e-87BH094_ORYSJ; Transcription factor BHLH094
SwissprotQ84T082e-87BH089_ORYSJ; Transcription factor BHLH089
TrEMBLM0TZB10.0M0TZB1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P11020_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-69BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]