PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P11550_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NF-YC
Protein Properties Length: 682aa    MW: 78105.3 Da    PI: 5.5659
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P11550_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC155.77.8e-49721742101
                  NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt 86 
                            l++f ++q   i  + dfknh+lPlarikki+kadedv+mi+ae+Pvl+++ace+filelt rsw haeenkrrtl+k+dia a+trt
  GSMUA_Achr9P11550_001  72 LQMFRTNQyqeIAATCDFKNHSLPLARIKKIMKADEDVRMIAAEVPVLFARACEMFILELTYRSWAHAEENKRRTLQKNDIAGAITRT 159
                            7888888866688899************************************************************************ PP

                  NF-YC  87 difdflvdivprdel 101
                            d+fdflvdivp +++
  GSMUA_Achr9P11550_001 160 DVFDFLVDIVPMEDV 174
                            ***********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.03E-3056165IPR009072Histone-fold
PfamPF008086.7E-2093156IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.107.4E-3594170IPR009072Histone-fold
SuperFamilySSF525401.28E-25301445IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM004871.2E-8340614IPR014001Helicase superfamily 1/2, ATP-binding domain
Gene3DG3DSA:3.40.50.3002.8E-25343443IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS5119211.528357641IPR014001Helicase superfamily 1/2, ATP-binding domain
PfamPF001765.0E-26359491IPR000330SNF2-related, N-terminal domain
CDDcd000462.98E-8364492No hitNo description
SuperFamilySSF525401.28E-25476512IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3002.8E-25477509IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF001767.8E-10593644IPR000330SNF2-related, N-terminal domain
SuperFamilySSF525401.73E-8594645IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3002.8E-25614643IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005524Molecular FunctionATP binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MEVPGHGQPA GTGAVQLPYV SLPYQANQMM VTSLPPSAGQ MTNPASQVQL TQHHLAYQRA  60
QQQQMNQLHQ TLQMFRTNQY QEIAATCDFK NHSLPLARIK KIMKADEDVR MIAAEVPVLF  120
ARACEMFILE LTYRSWAHAE ENKRRTLQKN DIAGAITRTD VFDFLVDIVP MEDVKEDVLA  180
SISTDGTNES LPYYYVPSQA GSLKMIMNNS EVDQRRRRRQ EETLDFLDAD DRVSTSDSEY  240
VLDEEEDGFD ESDQDASALA LGMMLSLQGI DTAGGGHGRE EPVRPRNDSR RRDRSAALLL  300
WQIWERENEK WIDEFEQKGQ DKLGFEPIGL VETAEPSPDV ILPLLRFQKE WLAWALKQEN  360
SDIKGGILAD EMGMGKTIQA ISLIKCTLVI CPVVAVIQWV GEIDRYTEKG STRVLVYHGA  420
KRDKINSNFD DYDFVITTYS TIECEFRKYM MPPKGFEKTK KQDELADKLM NPSPGKSILH  480
SVKWERIILD EVSNYPLAPY QRIRFRLQNT FSLLIGLEKL TDIARHMWYC GSSNMPRITG  540
ICISCHYHVY YAGQNIAFDN LNLAVIVYNI TAQFLLLVAT WIDPYCNFYV LMQAHFIKDR  600
RSNTAKAVFA LKSFYKWALS GTPLQNRVGE LYSLVRFLQI WPYSFYLCKD CNCKVLDYGC  660
LQFLEAYEAL IYLAVVSCFR SI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-4879170394NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143149RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6159061e-87JX615906.1 Gossypium hirsutum clone NBRI_GE60179 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417218.21e-164PREDICTED: DNA repair protein RAD16 isoform X2
TrEMBLM0TZG40.0M0TZG4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P11550_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38563676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.49e-58nuclear factor Y, subunit C9