PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P11590_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 79aa    MW: 8883.87 Da    PI: 4.7723
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P11590_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.64.3e-112871145
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                           ++ ++++E++l+++  ++ G  +W++Ia +++ gRt+k++  +w 
  GSMUA_Achr9P11590_001 28 KMDFSEDEEKLIARMYNLVGQSRWSLIAGRIP-GRTAKEIEKYWT 71
                           5689****************************.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.9822378IPR017930Myb domain
SuperFamilySSF466891.64E-92674IPR009057Homeodomain-like
SMARTSM007172.7E-82776IPR001005SANT/Myb domain
PfamPF002497.6E-112871IPR001005SANT/Myb domain
CDDcd001678.95E-103170No hitNo description
Gene3DG3DSA:1.10.10.608.4E-143172IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MADLDRSSED VSMDSKGVVS GGNSQISKMD FSEDEEKLIA RMYNLVGQSR WSLIAGRIPG  60
RTAKEIEKYW TSRYSTTSE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417220.16e-49PREDICTED: MYB-like transcription factor ETC1 isoform X1
TrEMBLM0TZG86e-50M0TZG8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P11590_0011e-50(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52753157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46410.14e-16MYB_related family protein