PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P12100_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 437aa    MW: 47456.6 Da    PI: 6.7298
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P12100_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.53.8e-063303671254
                            HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            R +++ +++  L++l+ +      +K + a++L++A+eYIk L
  GSMUA_Achr9P12100_001 330 RKEKLGDRITALQQLVSPF-----GKTDTASVLQEAIEYIKFL 367
                            677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.29318367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.79E-7328371No hitNo description
Gene3DG3DSA:4.10.280.101.2E-8328375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-11328381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0018329373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MAEDFHTGIC SEGCWWNPKG RASFDAQAST CSTAAAEIEG RAFSWASCGE AAGSAGGSSM  60
ISQETHEVQH SDVCPSLIID STTPSFSLSS SSMSWTKSLL NSVRPEGSFH AMLQEDPGSR  120
PCIRQHPPVD SNQVHTGAES SIANPFSDID HTCFLDHHHH HHHHHFSSGK EFSDVGVASY  180
HFPASYGYSS VMSQDESGIH DSGVMNRYQS PLVAYQGSSN EQRQPSWAKF SQLLKSPLSK  240
QQSQFTNNTL FWNASAAASV GDVKSILCSP TPSQFVMQPQ TTCGNLAACR ISPGGVQDSC  300
SSSTKKTGSE SAVKKPRIET PSPLPTFKVR KEKLGDRITA LQQLVSPFGK TDTASVLQEA  360
IEYIKFLHDQ VGVLSSPYLK DGHPMQHQIS SKSKDCDETK QDLRSRGLCL VPITSTYLVA  420
SETTADFWHP TFGGSFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417259.10.0PREDICTED: transcription factor bHLH123-like isoform X1
TrEMBLM0TZL90.0M0TZL9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P12100_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29703464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.34e-61bHLH family protein