PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr9P12600_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C2H2

Protein Properties

Length: 311aa MW: 35168.8 Da PI: 8.3244

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P12600_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2e-05	147	166	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ GSMUA_Achr9P12600_001 147 FSCPVCYKTFNRYNNMQMHM 166 89*****************9 PP
2	zf-C2H2	15.2	6e-05	231	253	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F k + ++H +++ GSMUA_Achr9P12600_001 231 FMCRKCGKAFAVKGDWRTHEKNC 253 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.17E-5	143	169	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.2E-6	147	166	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.743	147	174	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.45	147	169	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	149	169	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	7.91E-7	212	251	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.9E-6	227	251	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.787	231	251	IPR007087	Zinc finger, C2H2
SMART	SM00355	50	231	251	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MADPYTNFFI GIHQHYAFTS KPPPPSIAPQ FYNLSTQSYT NAFIPGHPPS PPLREALPLL 60 SLSPTRHQEE DEDTSCSAST EVAKNKASGV DDEADDAVTV ALHIGPPSPG AVDLISRLPS 120 TSEDRKLNKG QYWIPTPSQI LIGPTQFSCP VCYKTFNRYN NMQMHMWGHG SQYRKGPKSL 180 RGIQPTAMLR LPCYCCAPGC RNNIDHPRSK PLKDFRTLQT HYKRKHGIKP FMCRKCGKAF 240 AVKGDWRTHE KNCGKLWYCV CGSDFKHKRS LKDHIKAFGG EHAAYDINCF EEEDDPSSEI 300 EQDCHQRNEQ R

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC226039	0.0	AC226039.1 Musa acuminata clone BAC MA4-3G18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009417317.1	0.0	PREDICTED: zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-127	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	M0TZR9	0.0	M0TZR9_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P12600_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-125	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]