PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P12860_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family CO-like
Protein Properties Length: 417aa    MW: 45372.8 Da    PI: 4.9681
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P12860_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.12.7e-06444539
               zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                            C+ ++e++  ++C+++   lC +C    H+       H++
  GSMUA_Achr9P12860_001  4 LCDFCGEQRSVIYCRSDAAALCLSCDRIVHSAnalsrrHSR 44
                           7*************************999955666666765 PP
2CCT66.57.4e-23360403144
                    CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                            R+ a++RYkeK+ktRkFeKkirY+sRKa+Ae R RvKGrFvk+ 
  GSMUA_Achr9P12860_001 360 RDSAVMRYKEKKKTRKFEKKIRYASRKAMAEVRRRVKGRFVKAG 403
                            899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.9E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.168147IPR000315B-box-type zinc finger
CDDcd000213.27E-6447No hitNo description
PROSITE profilePS5101715.636360402IPR010402CCT domain
PfamPF062031.9E-17360402IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MSHLCDFCGE QRSVIYCRSD AAALCLSCDR IVHSANALSR RHSRTLLCDS CSTQPAFVRC  60
IEESVSLCQN CDWNKDGGSA VAKGHKRETI NCYIGCPSAA ELSRMWPFFK EFPPIEDADC  120
EQGLGLMTID ENSVTNCWGH PQNSISGAGK LNNPGAFDKF DSLIGSSSGP AICSMPCTAD  180
LVAGSVDSTT PKLSCPGTND SELCKDGLCD DFNLDDVDLT FQNYEELFGL SHNQTGHLFD  240
DHGIDVIFDP WDTCAANSNC QDEFVGEASS EGQVKPLPTT CSNAVSADSV MSNPGQNVDS  300
SMFFPARQAH SCLSFSFSGL TGESSARDYQ DCGVSSMLLM GEPPVFPAGP ESSMLPTASR  360
DSAVMRYKEK KKTRKFEKKI RYASRKAMAE VRRRVKGRFV KAGEAYDYDP LAKTRSC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417361.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9
RefseqXP_018686646.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9
RefseqXP_018686647.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9
TrEMBLM0TZU40.0M0TZU4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P12860_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-105CONSTANS-like 9