PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P13010_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MIKC_MADS
Protein Properties Length: 636aa    MW: 71394.7 Da    PI: 7.2203
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P13010_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.71.3e-27958150
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                           krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l  +s
  GSMUA_Achr9P13010_001  9 KRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFS 58
                           79********************************************9997 PP
2K-box18.39.4e-08109179979
                  K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 
                            + +++ e+lqqe+ + +++++  ++ +R +  + L+  s+++L++ e+ + ++l+++ ++K+ ll  +++ 
  GSMUA_Achr9P13010_001 109 VVNSNVEELQQEIGRYQQQLQLSEQRLRFFEPDHLSFTSMRDLESCEKFVMEALQRVTARKEYLLSHHLSS 179
                            678999****************99****************************************9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.716161IPR002100Transcription factor, MADS-box
SMARTSM004325.8E-38160IPR002100Transcription factor, MADS-box
CDDcd002651.29E-35278No hitNo description
SuperFamilySSF554553.66E-29279IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-253859IPR002100Transcription factor, MADS-box
PfamPF009165.1E-9340418IPR011547SLC26A/SulP transporter domain
PfamPF009163.5E-13456525IPR011547SLC26A/SulP transporter domain
PfamPF017408.6E-8524578IPR002645STAS domain
PROSITE profilePS508019.879526579IPR002645STAS domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008272Biological Processsulfate transport
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0015116Molecular Functionsulfate transmembrane transporter activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MGRVKLQIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGR  60
RRIEDVLARY VNLPENDRGG VIQNREFLIR ALKKLKCEND MAALANPTVV NSNVEELQQE  120
IGRYQQQLQL SEQRLRFFEP DHLSFTSMRD LESCEKFVME ALQRVTARKE YLLSHHLSSY  180
DPSASSMQER LPDPYGSEMV QWVPEGATNS GHQIFVGSDP LMDLREHGIY ESMAPQGMGL  240
PVDPCTAGCH VSGQHEVSWH QAYTSTELLS ALIPSPPYPL IQHPMAPTEL PTLVPQEQVE  300
ATAACSHLPM DDGGASNNTY DGNAAPVHVS PYRIPYVEGK KKKSLFWVPA IAPLIYVILA  360
TFLVYITHAG NQGVQIVNHI KKGINPSSLS RIYFAGPNAE KGFRIGIICG MIALTEELCC  420
FEGLPVGWKQ GNGGTWIHEC CFLNDLMLCC NRFILKISCR LHGWLPNMVM SAMVFLTLLL  480
ITPVFKYTPS AILASIIISA VIGLVDYQAA LLIWKIDKLD FATIVPGIII VRVDSAIYFS  540
NSNYVRKRIL RWFADEEEKE EAKGKPRIDL LIVDRTAIES SVHSDCFICC RRTSNIFHSF  600
SFMQLILANP GPVAIEKLEA SQFTELTRSS SLLLMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-17175174Myocyte-specific enhancer factor 2B
1tqe_Q2e-17175174Myocyte-specific enhancer factor 2B
1tqe_R2e-17175174Myocyte-specific enhancer factor 2B
1tqe_S2e-17175174Myocyte-specific enhancer factor 2B
6byy_A2e-17175174MEF2 CHIMERA
6byy_B2e-17175174MEF2 CHIMERA
6byy_C2e-17175174MEF2 CHIMERA
6byy_D2e-17175174MEF2 CHIMERA
6bz1_A2e-17175174MEF2 CHIMERA
6bz1_B2e-17175174MEF2 CHIMERA
6bz1_C2e-17175174MEF2 CHIMERA
6bz1_D2e-17175174MEF2 CHIMERA
6c9l_A2e-17175174Myocyte-specific enhancer factor 2B
6c9l_B2e-17175174Myocyte-specific enhancer factor 2B
6c9l_C2e-17175174Myocyte-specific enhancer factor 2B
6c9l_D2e-17175174Myocyte-specific enhancer factor 2B
6c9l_E2e-17175174Myocyte-specific enhancer factor 2B
6c9l_F2e-17175174Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9751811e-50EU975181.1 Zea mays clone 483488 MADS-box protein AGL66 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417786.10.0PREDICTED: agamous-like MADS-box protein AGL104
TrEMBLM0TZV90.0M0TZV9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P13010_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49533360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-74AGAMOUS-like 104