PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P14160_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SBP
Protein Properties Length: 458aa    MW: 50116.1 Da    PI: 9.2795
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P14160_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.46.4e-41176252278
                            -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                    SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                            CqvegC++dl++ak+yhr+h+vCe hsk+p+v+v+g+e+rfCqqCsrfh lsefD++krsCrrrL++hn+rrrk+q+
  GSMUA_Achr9P14160_001 176 CQVEGCNVDLTTAKDYHRKHRVCESHSKSPKVIVAGRERRFCQQCSRFHGLSEFDQKKRSCRRRLSDHNARRRKPQP 252
                            **************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.0E-34169237IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.847173250IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.94E-39174255IPR004333Transcription factor, SBP-box
PfamPF031101.7E-31176249IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MDWVAKNPFQ WDWETLDLFC GKESEIYKTA QEPELKIEGG MGICNGFVCS SGGGASSVLQ  60
LGNRSSKSSI SASIDSLSKA EKGNSDFNYD SAERDVNSSS KIILARVEGF GTSPVPLAAG  120
RPKEPVTGLK LGRTFFEDGG AENNIKSSSS SASMILSTAV AKKSRVSPQN LQSPKCQVEG  180
CNVDLTTAKD YHRKHRVCES HSKSPKVIVA GRERRFCQQC SRFHGLSEFD QKKRSCRRRL  240
SDHNARRRKP QPATISFSSS RLSSSYYDGR HHMNLVFGGN PLGHGMTSSP LEDDPSSFKL  300
IQPKHSWIKS NKAGDVNGQL QFSSTCQTHN ISTLHHDLNR LLPFKGTTAE VLNQGLEAPV  360
FASSLGGAPD LRRALSLLSN NSWSSANPGP SSNVKFVNTH PAANTIDSTA GFLQVEQPIG  420
PQSTMLPFNL QNHNGQFQEF QLLKAPYQAS FFDFTQIH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-261762491184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231248KKRSCRRRLSDHNARRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417524.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_009417525.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_009417526.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_009417527.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_018673925.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_018673927.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_018673928.10.0PREDICTED: squamosa promoter-binding-like protein 12
TrEMBLM0U0740.0M0U074_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P14160_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36973776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.37e-56squamosa promoter binding protein-like 2