PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P14570_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HD-ZIP
Protein Properties Length: 263aa    MW: 29479.7 Da    PI: 5.4009
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P14570_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.91.9e-1971124356
                            --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            k++++ ++q++ Le+ Fe ++++  e++ eLA+klgL+ rqV vWFqNrRa++k
  GSMUA_Achr9P14570_001  71 KKRRLMPDQVHLLERSFEAENKLEPERKSELARKLGLQPRQVAVWFQNRRARWK 124
                            5567899**********************************************9 PP
2HD-ZIP_I/II131.82.6e-4270161192
            HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                            ekkrrl  +qv+lLE+sFe+e+kLeperK+elar+LglqprqvavWFqnrRAR+ktkqlE+d+++Lk++y++l +++++L ke++ Lr
  GSMUA_Achr9P14570_001  70 EKKRRLMPDQVHLLERSFEAENKLEPERKSELARKLGLQPRQVAVWFQNRRARWKTKQLEHDFDRLKSSYNSLLSDHDSLLKENDGLR 157
                            69************************************************************************************** PP

            HD-ZIP_I/II  89 eelk 92 
                            +++ 
  GSMUA_Achr9P14570_001 158 SQVI 161
                            9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.32966126IPR001356Homeobox domain
SMARTSM003893.1E-1869130IPR001356Homeobox domain
CDDcd000862.39E-1771127No hitNo description
SuperFamilySSF466893.63E-1871137IPR009057Homeodomain-like
PfamPF000461.2E-1671124IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-2073133IPR009057Homeodomain-like
PRINTSPR000311.1E-697106IPR000047Helix-turn-helix motif
PROSITE patternPS000270101124IPR017970Homeobox, conserved site
PRINTSPR000311.1E-6106122IPR000047Helix-turn-helix motif
PfamPF021831.5E-17126168IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDPARLIFDS SSSHRHHGHR MLLLGSGGVS PVFGGAISAL AEGANKRRPF FTSPDEILEE  60
EYYYDEQLPE KKRRLMPDQV HLLERSFEAE NKLEPERKSE LARKLGLQPR QVAVWFQNRR  120
ARWKTKQLEH DFDRLKSSYN SLLSDHDSLL KENDGLRSQV ISLTEKLQSK AAALMAAAAS  180
VNDPASLGVP KKAEDRLSTG SGGSAVVDAN QLLHSSEESC LPDGYHSMGL VDGRVHSEED  240
DASDEGCNYY SEEDAQLGWW VWN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118126RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417556.10.0PREDICTED: homeobox-leucine zipper protein HOX16-like
SwissprotQ6YWR41e-72HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16
TrEMBLM0U0B50.0M0U0B5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P14570_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26093887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-60homeobox 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]