PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P15000_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 199aa    MW: 22355.5 Da    PI: 6.874
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P15000_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87.2e-12250455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                           +h ++Er+RR+ +N+ ++ Lr+l+P +   + +K + a+i+  A++++k+L+
  GSMUA_Achr9P15000_001  2 THIAVERNRRRLMNEYLAVLRSLMPAS---YVQKGDQASIVGGAINFVKELE 50
                           8**************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.291149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.91E-10154No hitNo description
SuperFamilySSF474596.41E-15166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-9250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-13261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-10455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MTHIAVERNR RRLMNEYLAV LRSLMPASYV QKGDQASIVG GAINFVKELE QSVQSLEAQK  60
RIRERSKAAP FADFFTFPQY SSSSSHCTST SSTDTTATVE AARRNPSAMA DIEVTIVESH  120
ANVKIFSRWR PRQLLMLVLG LQNLRLTTLH LNVTTVDEMV LYCFSLKVED DCQCASVDVI  180
ATAVHQIIAR IEEEETAHH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417602.11e-146PREDICTED: transcription factor bHLH94-like isoform X1
SwissprotQ9C7T46e-68BH096_ARATH; Transcription factor bHLH96
TrEMBLM0U0F81e-146M0U0F8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P15000_0011e-146(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.19e-61bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]