PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P15140_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 230aa    MW: 24951.3 Da    PI: 10.5837
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P15140_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH407.1e-1355101354
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            r+h+e+ErrRR+riN  +++Lr+llP a     ++l+Ka+ L ++v+ +++L
  GSMUA_Achr9P15140_001  55 RSHSEAERRRRQRINGHLATLRSLLPAA-----TRLDKAALLGEVVRQVREL 101
                            58**************************.....9*********999988777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.66952101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-1055101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-1255105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.79E-1055106No hitNo description
SuperFamilySSF474596.28E-1355108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-1158107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.5E-4142199No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MPSSNALHAC YSLMIWPPRS SSSGGELVRG VGMQPVATGE MVHETRTAGE TRAVRSHSEA  60
ERRRRQRING HLATLRSLLP AATRLDKAAL LGEVVRQVRE LRVRVEEVAV MVPGEGDEVG  120
VEEEEEEGGG GGGRGRVVRA WVCCADRPGL MGELSRAVRS VRARAVRAEM VTVGGRTRSL  180
LELEVSEAAE RGEGRSALQA ALWAVLLTNR TAPAENYSKR ARTSTRFSKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417611.21e-159PREDICTED: transcription factor bHLH30-like isoform X1
TrEMBLM0U0H21e-158M0U0H2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P15140_0011e-159(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41143569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.17e-13bHLH family protein