PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P15380_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 245aa    MW: 26283 Da    PI: 6.0053
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P15380_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.42.2e-07150190954
                            HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             r RR+ri +++  L+ ++P       +K++ a++L +A++Y+k L
  GSMUA_Achr9P15380_001 150 ARLRRERISERMRVLQHMVPGG-----TKMDTASMLDEAIHYVKFL 190
                            699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.123141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-13142200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.73E-12143195No hitNo description
SuperFamilySSF474596.15E-14145202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-12147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-4151190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDVDFLNASP ELQVDLMNMM LQLQQLAELS EALPPNEQLS AASPQAFHSS PTAPASPVFA  60
GPQTSSSSSL DATAAYDPIM GPLLNGSLAG DPSLASGPSS LAHGPASTAA MREMIFRIAA  120
MQPVHVDPDS VKPPKRRNVR ISKDPQSVAA RLRRERISER MRVLQHMVPG GTKMDTASML  180
DEAIHYVKFL KTQVRSLEQA AVSQGMGAAA ALPPTAGLIP SPGGYSYFQD MYQLQDQTFM  240
NFAQM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150155RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417818.11e-177PREDICTED: transcription factor HEC2-like
SwissprotQ9SND44e-45HEC2_ARATH; Transcription factor HEC2
TrEMBLM0U0J61e-176M0U0J6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P15380_0011e-177(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.14e-43bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]