PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P15540_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MIKC_MADS
Protein Properties Length: 245aa    MW: 28244.3 Da    PI: 9.8491
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P15540_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.37.2e-271059251
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           ri++++ rqvtfskRrng+lKKA+EL +LCdaev +++fsstg+lye++s
  GSMUA_Achr9P15540_001 10 RIDDTTSRQVTFSKRRNGLLKKAKELAILCDAEVGLVVFSSTGRLYEFAS 59
                           8***********************************************86 PP
2K-box77.63.3e-2678171699
                  K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                             +  ++++ + +q+e+a L++++ nLq+++R+l Ge+++ Ls+k+Lq+Le+qL  s++++R kK++ll e+i+el +k + +++en +
  GSMUA_Achr9P15540_001  78 LVMSAASEVKFWQREAASLRQQLYNLQQNLRQLTGEEISGLSVKDLQNLENQLRMSVRNVRMKKDQLLEEEIQELDRKGRLIHQENLE 165
                            445778999******************************************************************************* PP

                  K-box  94 Lrkkle 99 
                            L +k++
  GSMUA_Achr9P15540_001 166 LYQKIN 171
                            ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.931161IPR002100Transcription factor, MADS-box
SMARTSM004327.2E-39160IPR002100Transcription factor, MADS-box
CDDcd002651.00E-43277No hitNo description
SuperFamilySSF554551.83E-31285IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-283859IPR002100Transcription factor, MADS-box
PfamPF014868.5E-2683170IPR002487Transcription factor, K-box
PROSITE profilePS5129715.91686176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGRGKIAIRR IDDTTSRQVT FSKRRNGLLK KAKELAILCD AEVGLVVFSS TGRLYEFAST  60
SMESVIERYS KAKEERQLVM SAASEVKFWQ REAASLRQQL YNLQQNLRQL TGEEISGLSV  120
KDLQNLENQL RMSVRNVRMK KDQLLEEEIQ ELDRKGRLIH QENLELYQKI NMIRQENMEL  180
YKEVYAAKGK NGTDRGSIVP YDFSITDGAA YKPIHLRLSQ PQPNADGIKT EPPPNLRLQL  240
HYRDG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-22174174MEF2C
5f28_B3e-22174174MEF2C
5f28_C3e-22174174MEF2C
5f28_D3e-22174174MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417649.10.0PREDICTED: MADS-box transcription factor 23-like isoform X2
SwissprotQ6EP491e-105MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLM0U0L21e-180M0U0L2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P15540_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.14e-84AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]