PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P15640_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 248aa    MW: 27886.7 Da    PI: 7.9353
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P15640_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.25.7e-161461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd +lv+    +G+ +W+++++  g+ R++k+c++rw +yl
  GSMUA_Achr9P15640_001 14 KGPWTAEEDRKLVNFMLNHGKCCWRAVPELAGLLRCGKSCRLRWTNYL 61
                           79******************************99************97 PP
2Myb_DNA-binding46.48.9e-1571111547
                            -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            +  E++l +d++ qlG++ W++Ia++++ gRt++++k+ w+++
  GSMUA_Achr9P15640_001  71 SDAEEKLVIDLHSQLGNR-WSKIASHLP-GRTDNEIKNLWNTH 111
                            778***************.*********.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-20562IPR009057Homeodomain-like
PROSITE profilePS5129414.248961IPR017930Myb domain
SuperFamilySSF466894.49E-2611108IPR009057Homeodomain-like
SMARTSM007179.5E-121363IPR001005SANT/Myb domain
PfamPF002492.4E-141461IPR001005SANT/Myb domain
CDDcd001673.02E-81661No hitNo description
PROSITE profilePS5129424.03962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-2363116IPR009057Homeodomain-like
SMARTSM007175.7E-1266114IPR001005SANT/Myb domain
CDDcd001672.72E-971112No hitNo description
PfamPF002499.8E-1371111IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MGRKPCCEKV GLKKGPWTAE EDRKLVNFML NHGKCCWRAV PELAGLLRCG KSCRLRWTNY  60
LRPDLRRGLL SDAEEKLVID LHSQLGNRWS KIASHLPGRT DNEIKNLWNT HIKKKLRKIG  120
IDPLPHMPII PSANEQTHQQ PKQQRRHVDA WSNGDQKAEE ATSNSCPEFC TDEVPIIQPH  180
EILIPCGSSS SSSSSSSSCS STGSSAKAGP IEPPSFMELP ESTYLWGVDD LTVWSSIHGE  240
ELWKHDLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-26121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417822.11e-161PREDICTED: protein ODORANT1-like
SwissprotQ9C7U71e-81MYB20_ARATH; Transcription factor MYB20
TrEMBLM0U0M20.0M0U0M2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P15640_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.13e-85myb domain protein 43
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]