PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr9P15750_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

MYB

Protein Properties

Length: 211aa MW: 24974.2 Da PI: 9.5784

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P15750_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.2	2.9e-16	6	49	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 W + Ed++l+ +v+++G+++W++Ia++++ gR++k+c++rw++ GSMUA_Achr9P15750_001 6 HWMPAEDDKLKVLVTKYGPHNWNAIAEKLQ-GRSGKSCRLRWFNQ 49 699*************************.*********996 PP
2	Myb_DNA-binding	56	9.4e-18	56	99	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r+++T++Ed+ll+ a++ +G++ W+ Iar ++ gRt++ +k++w+ GSMUA_Achr9P15750_001 56 RKPFTKDEDQLLLAAHEIYGNR-WAIIARLFP-GRTDNAVKNHWHV 99 789*****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.38	1	50	IPR017930	Myb domain
SMART	SM00717	4.5E-12	3	52	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.08E-29	4	97	IPR009057	Homeodomain-like
Pfam	PF00249	2.2E-15	5	49	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.1E-25	6	57	IPR009057	Homeodomain-like
CDD	cd00167	9.75E-12	7	48	No hit	No description
PROSITE profile	PS51294	25.763	51	105	IPR017930	Myb domain
SMART	SM00717	4.0E-16	55	103	IPR001005	SANT/Myb domain
Pfam	PF00249	5.4E-15	56	98	IPR001005	SANT/Myb domain
CDD	cd00167	2.79E-12	58	98	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.8E-21	58	103	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MNTKCHWMPA EDDKLKVLVT KYGPHNWNAI AEKLQGRSGK SCRLRWFNQL DPRINRKPFT 60 KDEDQLLLAA HEIYGNRWAI IARLFPGRTD NAVKNHWHVI MVRRHKQRSQ LPRKRGDQST 120 FVEEEESKSS KKRKLEPRNT LLMTFFYVSL NSISIDGKDN SLKFYDFLQV NSDSDSTPED 180 VRREGEERYE DKEEENKSHA RFIDFLEVGS F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	2e-32	1	104	1	104	C-Myb DNA-Binding Domain
1msf_C	2e-32	1	104	1	104	C-Myb DNA-Binding Domain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	133	RKRGDQSTFVEEEESKSSKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers. {ECO:0000269\|PubMed:18952777}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018673631.1	1e-127	PREDICTED: myb-related protein B-like
Swissprot	Q9FX36	1e-68	MYB54_ARATH; Transcription factor MYB54
TrEMBL	M0U0N2	1e-157	M0U0N2_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P15750_001	1e-158	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP294	38	260

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17950.1	4e-65	myb domain protein 52

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]