PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P16040_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 257aa    MW: 29254.5 Da    PI: 4.9102
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P16040_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.2e-151461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg+W++ Ed++l d+++ +G g W+  ++  g++R++k+c++rw++yl
  GSMUA_Achr9P16040_001 14 RGAWSAREDQILTDYITIHGEGKWRDLPESAGLKRCGKSCRLRWLNYL 61
                           89********************************************97 PP
2Myb_DNA-binding54.82.2e-1767112148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg+ T++E+ l+v+++++lG++ W++Ia +++ gRt++++k++w++yl
  GSMUA_Achr9P16040_001  67 RGNITEDEENLIVRLHALLGNR-WSLIAGRLP-GRTDNEIKNYWNTYL 112
                            7999******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-22564IPR009057Homeodomain-like
PROSITE profilePS5129414.719961IPR017930Myb domain
SuperFamilySSF466897.03E-2812108IPR009057Homeodomain-like
SMARTSM007172.6E-111363IPR001005SANT/Myb domain
PfamPF002496.8E-131461IPR001005SANT/Myb domain
CDDcd001674.94E-81661No hitNo description
PROSITE profilePS5129426.01862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2465115IPR009057Homeodomain-like
SMARTSM007175.5E-1666114IPR001005SANT/Myb domain
PfamPF002497.4E-1667112IPR001005SANT/Myb domain
CDDcd001675.63E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGRRPCCSKE GLNRGAWSAR EDQILTDYIT IHGEGKWRDL PESAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI TEDEENLIVR LHALLGNRWS LIAGRLPGRT DNEIKNYWNT YLGKKTSPQL  120
CIRGSSRRKE NKKGESSVEE VYLPSLREEL LPTDNYHSYE LTHHNESPSS LVLRDAGPVD  180
FLADFDMDEL MSSFEDDGLL QRCIDEAHDD GNFNSLWFCD AMQQDAREGT GCPESHAAFE  240
LESLASPMDS AEGEQKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417697.10.0PREDICTED: transcription factor TT2 isoform X1
TrEMBLM0U0R10.0M0U0R1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P16040_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.18e-62myb domain protein 3