PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P16610_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARR-B
Protein Properties Length: 723aa    MW: 79788.2 Da    PI: 6.3029
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P16610_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.71.3e-28214267155
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            kpr++W+ +LH++Fv av+qL G +kA+Pk+ilelm+v gLt+e+v+SHLQkYRl
  GSMUA_Achr9P16610_001 214 KPRVVWSVDLHQQFVTAVNQL-GVDKAVPKKILELMNVAGLTRENVASHLQKYRL 267
                            79*******************.********************************8 PP
2Response_reg75.42.2e-25311391109
                            EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS
           Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 
                            vl+vdD+p+ +++l ++l+k  y +v++++ +  al +l+ek+  +Dl+l D+ mp+mdG++ll++i  e  +lp+i+++a + ++ +
  GSMUA_Achr9P16610_001  31 VLLVDDDPTCLKILDRMLRKCLY-DVTTCSRAALALSILREKKgwFDLVLSDVYMPDMDGFKLLEHIGLEM-DLPVIMMSADDHKDVV 116
                            89*********************.***************999889**********************6654.8*************** PP

                            HHHHHTTESEEEESS--HHHHHH CS
           Response_reg  87 lealkaGakdflsKpfdpeelvk 109
                             + +  Ga d++ Kp+ +e l +
  GSMUA_Achr9P16610_001 117 MKGVTHGACDYIIKPVRMESLKN 139
                            ****************9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.7E-15712709IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23006.5E-4228152No hitNo description
SuperFamilySSF521721.85E-3428153IPR011006CheY-like superfamily
SMARTSM004481.2E-2929141IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.16830145IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-2231139IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.30E-2732144No hitNo description
PROSITE profilePS5129410.854211270IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-30212272IPR009057Homeodomain-like
SuperFamilySSF466895.38E-19212271IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-24214267IPR006447Myb domain, plants
PfamPF002491.0E-7216266IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MDPSRAASTP SHGPPDDGGG PAPEFPAGLR VLLVDDDPTC LKILDRMLRK CLYDVTTCSR  60
AALALSILRE KKGWFDLVLS DVYMPDMDGF KLLEHIGLEM DLPVIMMSAD DHKDVVMKGV  120
THGACDYIIK PVRMESLKNI WQHVVRKKRN ELKELENSGS VEEDDKHKRS LDDGDNASSG  180
CVGNWKNAKR KKEEKDEEEE EMVEEHDDSS STKKPRVVWS VDLHQQFVTA VNQLGVDKAV  240
PKKILELMNV AGLTRENVAS HLQKYRLYLR RVSVPQHHGR FDAHFASAQE VTYNNSIGSV  300
SGYDFQALAA STQLLPQNIA ALHSGPRSAT NTGMGVSAID QLSFLSSGKQ VTNSSNIISS  360
SVQQINSRQM SDVHGPSNNI ELNQLGQSQQ VVQPFGSINQ QFGEGTTNLF SLPSSELTNF  420
SLPRGTINEQ LNNSLARHMN QHGQQFPISQ QRSNMDITLQ GLPRSRGQLL TETACHDSRL  480
VSALLQQVPP NNIPNHVSGR LETSANMLTS LPANYLNASC STSPQALYPD VHNSFITGLP  540
GSCYRCVSSK GATPQTGSVK ALSNSSNLKG MDNHVPNFDI IGEHHQNKSQ DWKLQNVNLP  600
YQSGQNLGHG QSTIDCYSSL MGNQDSTSTA KNGFNGNAGT VTKNIISTRS DIDMEKRECI  660
VQHKTNLVEN CNRVNYDGIP DLSYQDILFE DNIITNELMN VVRKQQQEGI GQVDNEFNFN  720
PPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-22210273164ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009417757.10.0PREDICTED: two-component response regulator ARR1-like
TrEMBLM0U0W80.0M0U0W8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P16610_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57963754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.11e-117response regulator 1