PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr9P17440_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

SBP

Protein Properties

Length: 975aa MW: 110118 Da PI: 6.7619

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P17440_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	116.2	1.7e-36	116	192	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv+gCe+d+se+k yh+rh+vC +++a++v+++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k GSMUA_Achr9P17440_001 116 RCQVPGCEVDISELKGYHKRHRVCLRCANASSVVLDGEHKRYCQQCGKFHVLPDFDEGKRSCRRKLERHNKRRRRKP 192 6************************************************************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.4E-28	110	178	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	29.821	114	191	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	9.16E-34	115	194	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.6E-27	117	191	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 975 aa Download sequence Send to blast
MWDWGNLLDF TICDDEPLIL PWGVTEEAQT PSSPFPAELP PLPSPELAPS PSTTPDGTSR 60 VRKRDPRLVC PNYLAGMVPC SCPEVDEKVM EEEEVAEVVT GTRKRSRTGG ASPVVRCQVP 120 GCEVDISELK GYHKRHRVCL RCANASSVVL DGEHKRYCQQ CGKFHVLPDF DEGKRSCRRK 180 LERHNKRRRR KPNDSNSIVE KDLEAQEDSL PDGTCDGEPL TVQNRSNNAT NYDCCTHGHF 240 DDMEVDNITS NVINLVVGKR SYCFFFSVKE TSHFSFFVLD CVGVITIDGF ILLETKELQK 300 MLNDSICHTA ETVVSIKVLA RGTVVESEGG QGSPIGSHPS FKNDGLATSC EVQRAEKITN 360 SKSALSSTFC ENKSTYSSVC PTGRISFKLY DWNPAEFPRR LRHQIFHWLA NMPVELEGYI 420 RPGCTILTVF IAMPQFMWEK LSQDVAHYVR DLINTPESLL FGRGTILIFL NNMIIHVLQD 480 GTTLTNIKME VQAPILHYVY PSCFEAGKPM EFVACGSNLE QSKFRFLVSF AGKYLKHDSM 540 RVTSTRKSRS YDGNEVECIE SSEHEMFMIK VTHMDSEIFG PAFIEVENVS GISNFIPVLV 600 GNKQICSEFE RMEGVFADCY ASSIISQNAI TDSSPGSCDF FASRQSVMSA LLLDIAWLMK 660 APHLEDKEAF RSLTNVQRLT SLLKFLLQNE LFSVLQVIMH HLDSIVDVDG FDKLDKWTDV 720 DQKLFHEYLS HAREILYERT HDMRSEAEMR NPICGLMPQS SQSNMCGEIY TKQVNSCSRT 780 DPVHAGIWIL GVIDSFQPAV EHDVNVLLVN EEISHRQHCH HNLGKKCAFD DLFSNKITRT 840 RFPLFVIVSV VLCLAACIIL LHPHEVGEIA VSIRRCMFES SRATRHIDNH IQQLAQSKDM 900 TVTQIAVPQR MMAVMLGNHW SRLHNLRVVH GLRSNILHMP PKIQIMELDK VLVKFIRGRG 960 KGRGKKLIVF TAIVL

Sequence ? help Back to Top

Protein Sequence Length: 975 aa Download sequence Send to blast

MWDWGNLLDF TICDDEPLIL PWGVTEEAQT PSSPFPAELP PLPSPELAPS PSTTPDGTSR  60
VRKRDPRLVC PNYLAGMVPC SCPEVDEKVM EEEEVAEVVT GTRKRSRTGG ASPVVRCQVP  120
GCEVDISELK GYHKRHRVCL RCANASSVVL DGEHKRYCQQ CGKFHVLPDF DEGKRSCRRK  180
LERHNKRRRR KPNDSNSIVE KDLEAQEDSL PDGTCDGEPL TVQNRSNNAT NYDCCTHGHF  240
DDMEVDNITS NVINLVVGKR SYCFFFSVKE TSHFSFFVLD CVGVITIDGF ILLETKELQK  300
MLNDSICHTA ETVVSIKVLA RGTVVESEGG QGSPIGSHPS FKNDGLATSC EVQRAEKITN  360
SKSALSSTFC ENKSTYSSVC PTGRISFKLY DWNPAEFPRR LRHQIFHWLA NMPVELEGYI  420
RPGCTILTVF IAMPQFMWEK LSQDVAHYVR DLINTPESLL FGRGTILIFL NNMIIHVLQD  480
GTTLTNIKME VQAPILHYVY PSCFEAGKPM EFVACGSNLE QSKFRFLVSF AGKYLKHDSM  540
RVTSTRKSRS YDGNEVECIE SSEHEMFMIK VTHMDSEIFG PAFIEVENVS GISNFIPVLV  600
GNKQICSEFE RMEGVFADCY ASSIISQNAI TDSSPGSCDF FASRQSVMSA LLLDIAWLMK  660
APHLEDKEAF RSLTNVQRLT SLLKFLLQNE LFSVLQVIMH HLDSIVDVDG FDKLDKWTDV  720
DQKLFHEYLS HAREILYERT HDMRSEAEMR NPICGLMPQS SQSNMCGEIY TKQVNSCSRT  780
DPVHAGIWIL GVIDSFQPAV EHDVNVLLVN EEISHRQHCH HNLGKKCAFD DLFSNKITRT  840
RFPLFVIVSV VLCLAACIIL LHPHEVGEIA VSIRRCMFES SRATRHIDNH IQQLAQSKDM  900
TVTQIAVPQR MMAVMLGNHW SRLHNLRVVH GLRSNILHMP PKIQIMELDK VLVKFIRGRG  960
KGRGKKLIVF TAIVL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul5_A	5e-46	114	198	3	87	squamosa promoter binding protein-like 7
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	173	191	KRSCRRKLERHNKRRRRKP
2	177	189	RRKLERHNKRRRR
3	184	191	NKRRRRKP
4	185	190	KRRRRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009417907.1	0.0	PREDICTED: squamosa promoter-binding-like protein 9 isoform X1
TrEMBL	M0U151	0.0	M0U151_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P17440_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6922	33	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.1	1e-124	squamosa promoter binding protein-like 7