PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr9P18080_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bHLH

Protein Properties

Length: 485aa MW: 52152 Da PI: 5.9515

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P18080_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.8	7.1e-12	336	381	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L+el+P++ K +Ka++L + +eY+k Lq GSMUA_Achr9P18080_001 336 HSIAERLRREKIAERMKNLQELVPSS-----NKTDKASMLDEIIEYVKFLQ 381 99*********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.96E-16	329	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.933	331	380	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-16	333	390	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.67E-12	335	385	No hit	No description
Pfam	PF00010	3.6E-9	336	381	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.2E-13	337	386	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MDDLLNSFIS SPTWSDRNVS SKASWNNTSI PQTNVLLADY VESYGEVKNP SVCSVSSSNI 60 VGNADAEDLN MHGHERTSSI LLDGKINYGI LKDLYSGERL YHQILHCQTS NSVSLDNETQ 120 VTTFSLEGVT DSNPTSASFE SALPHTTLAI SSSIGSTSSE LSAFPQSLVD AHSINSVPIV 180 WPSSYSSVSS FIGHGNLPAF SYQGHENHDD ILGKISLENG KFRDVKDQNE QHNFSSFSAG 240 QQINLIPSAL QPQKEQNGLH SPCFPSGSSM MVLSKMAGMQ SPLQPSLLSE RHNASHHQIN 300 TSTGAQSQAV FANASGCNGA AKPRARARRG QATDPHSIAE RLRREKIAER MKNLQELVPS 360 SNKTDKASML DEIIEYVKFL QLQVKVLSMS RLGATGAVVP LLTDTQTEGS GSLLLWSSSV 420 GQGGSDISES GDSLAFEKEV VKLMETNVTT AMQYLQHKGL CLMPIALATA ISTQKGSSST 480 STPPD

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MDDLLNSFIS SPTWSDRNVS SKASWNNTSI PQTNVLLADY VESYGEVKNP SVCSVSSSNI  60
VGNADAEDLN MHGHERTSSI LLDGKINYGI LKDLYSGERL YHQILHCQTS NSVSLDNETQ  120
VTTFSLEGVT DSNPTSASFE SALPHTTLAI SSSIGSTSSE LSAFPQSLVD AHSINSVPIV  180
WPSSYSSVSS FIGHGNLPAF SYQGHENHDD ILGKISLENG KFRDVKDQNE QHNFSSFSAG  240
QQINLIPSAL QPQKEQNGLH SPCFPSGSSM MVLSKMAGMQ SPLQPSLLSE RHNASHHQIN  300
TSTGAQSQAV FANASGCNGA AKPRARARRG QATDPHSIAE RLRREKIAER MKNLQELVPS  360
SNKTDKASML DEIIEYVKFL QLQVKVLSMS RLGATGAVVP LLTDTQTEGS GSLLLWSSSV  420
GQGGSDISES GDSLAFEKEV VKLMETNVTT AMQYLQHKGL CLMPIALATA ISTQKGSSST  480
STPPD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009417990.1	0.0	PREDICTED: transcription factor bHLH133-like
TrEMBL	M0U1B5	0.0	M0U1B5_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P18080_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3254	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	4e-53	LJRHL1-like 3