PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P18510_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 312aa    MW: 34262 Da    PI: 6.105
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P18510_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.83.1e-11144192355
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +h+ +Er RR++iN+++  L++l+P +    sk   Ka +L + ++Y++sLq
  GSMUA_Achr9P18510_001 144 NSHSLAERVRREKINERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 192
                            58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.28E-18139208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.28E-12139196No hitNo description
PROSITE profilePS5088816.164141191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-17142202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-8144192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-12147197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MMNLFGADPS PNSHPNASRM NSGVVADASF STDHGSKNDS AMEEQKEKDN FDGIAALSSE  60
SSLPDFTGAH QEHPTGNSSK MKMKKSNEDM RLEEAKVASQ ISGDNMGFEH IAENSSSGKH  120
VKDGTESSNE DVIHVRARRG QATNSHSLAE RVRREKINER MKLLQDLVPG CSKVTGKAVM  180
LDEIINYVQS LQQQVEFLSM RFAAINPCPN MDTEAVISRY LFQSCNGPSA TSGFSADIAH  240
PQLHPSQQGL IQAGLSDIVN PPDLFRRSIN TQMAAVDGSK MQVHNAWDEE LHNVMHMAYS  300
SNVNLDSHRV HQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009418034.10.0PREDICTED: transcription factor bHLH49-like isoform X4
SwissprotQ9CAA93e-52BH049_ARATH; Transcription factor bHLH49
TrEMBLM0U1F80.0M0U1F8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P18510_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.22e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]