PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P18770_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRAS
Protein Properties Length: 569aa    MW: 60757.3 Da    PI: 7.1841
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P18770_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS319.47.7e-981905692374
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                            ++ Ll+ A+a+ +g+l +a+a L+ l+  a  +gd+ +Rl a+++ AL +rl++ + ++++  p  + +   s e++aa+++++ +sP
  GSMUA_Achr9P18770_001 190 RQMLLDTATALGEGNLDAATANLTLLKRAADTRGDAEHRLMAVMVTALLSRLNHPQVGISH--PIADLR---SPEHFAATQMLYSLSP 272
                            689***************************************************6666665..555554...679************* PP

                   GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.....egppslRiTgvgspesg....skeeleetgerLakf 168
                            ++k++++taN+aIl+a++ e ++Hi+Df+++qG+Q++aL+q+ a+R      ++pp +RiT++ +p+s     ++ +l+++g+r++k+
  GSMUA_Achr9P18770_001 273 CFKLGFVTANSAILDATKDEPKIHILDFEVGQGGQYAALIQTVAERLrlrpaKSPPAIRITAIIDPSSPftniNAGNLRAVGDRIKKL 360
                            ********************************************9988888888***********99888999*************** PP

                   GRAS 169 AeelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255
                            Ae+++v ++fn+ v+ r+++l   +L +++ +E+l+Vnl + l r++desvs e++rde+L+ v  l+P++v ++eqe+++++++F +
  GSMUA_Achr9P18770_001 361 AERFRVVLHFNI-VSLRVAELGAASLGCETgEETLVVNLPFVLSRVPDESVSPENPRDELLRRVCALRPRLVAIAEQEINTSTAPFPA 447
                            ***********9.799**************889******************************************************* PP

                   GRAS 256 rflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                            r++ea+++y al++slea +   s  er  vE+  l+r++vn+va egaer+er+e l+kWr+r+++aGF+pvpl+ ++++++k+ l+
  GSMUA_Achr9P18770_001 448 RLAEACRHYGALLESLEAAAQDSSgPERGRVEAG-LARRAVNAVAGEGAERVERCEVLGKWRARMSMAGFEPVPLGPTVVESIKARLA 534
                            *****************998777799********.9999**********************************************999 PP

                   GRAS 343 kvk.sdgyrveeesgslv..lgWkdrpLvsvSaWr 374
                                + g++v+e+ gsl   + W++r L+++SaWr
  GSMUA_Achr9P18770_001 535 SSWpNPGFTVKEDAGSLAlgFAWMNRVLTVASAWR 569
                            9888************995567************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.261163546IPR005202Transcription factor GRAS
PfamPF035142.7E-95190569IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MASGIPGRKL GYEGSGGGGG GGNLFKRTLA DMERQLQNAL LLRSVRQRTQ TMPSIFSFSY  60
GVGGLVCNSF TAAEPQRLVS SLPSASSSEF GLPRKPELLL VSSVPEDRSP VSVSDQLREL  120
ERQLLLDDED EAEASVSCGS AATHAEAIQR LISPPPLLAS PTNSSSSTIS FASCSPPSSM  180
PSPPLPPSSR QMLLDTATAL GEGNLDAATA NLTLLKRAAD TRGDAEHRLM AVMVTALLSR  240
LNHPQVGISH PIADLRSPEH FAATQMLYSL SPCFKLGFVT ANSAILDATK DEPKIHILDF  300
EVGQGGQYAA LIQTVAERLR LRPAKSPPAI RITAIIDPSS PFTNINAGNL RAVGDRIKKL  360
AERFRVVLHF NIVSLRVAEL GAASLGCETG EETLVVNLPF VLSRVPDESV SPENPRDELL  420
RRVCALRPRL VAIAEQEINT STAPFPARLA EACRHYGALL ESLEAAAQDS SGPERGRVEA  480
GLARRAVNAV AGEGAERVER CEVLGKWRAR MSMAGFEPVP LGPTVVESIK ARLASSWPNP  540
GFTVKEDAGS LALGFAWMNR VLTVASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-3420856922375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009418085.10.0PREDICTED: scarecrow-like protein 8
TrEMBLM0U1I40.0M0U1I4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P18770_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41883474
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-109SCARECROW-like 8