PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P18780_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family B3
Protein Properties Length: 286aa    MW: 31194.2 Da    PI: 8.7062
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P18780_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3331.1e-10971265685
                            TTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                     B3  56 sgryvltkGWkeFvkangLkegDfvvFkld 85 
                            s++yv+tkGW++Fvk+++L++gD+v F + 
  GSMUA_Achr9P18780_001  97 SQSYVMTKGWSRFVKEKRLDAGDIVSFGRG 126
                            799************************843 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.0E-96797IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-1469125IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-1171123No hitNo description
PfamPF023629.4E-896126IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.4E-998129IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MEFTSGRRDG LYIIGEEKQK DAFTYPSIFA LSSSSSSPST STAFRWHVRP CDGGAAGDGR  60
RESDFFTEKE HMFDKVVTPS DVGKLNRLVI PKQHAESQSY VMTKGWSRFV KEKRLDAGDI  120
VSFGRGVGES TRDQHYIDWK PRPVNGDIPM LPLNPLTGVS LARPLGPWGG HTGGGQLLFF  180
RSSMARPPQI AAQRDSGSGP PMVLSSPPLV RNQAEAKRVR LFGVNLDCPE SKGDEHLVPS  240
ARSPSAAQLQ PASTLPFHPL PHGSMEFSEA SSSTNKDLHL PLDLGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-31671462117B3 domain-containing transcription factor NGA1
5os9_B5e-31671462117B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2158131e-32AC215813.1 Oryza minuta clone OM__Ba0033I16, complete sequence.
GenBankAC2160321e-32AC216032.2 Oryza minuta clone OM__Ba0196N15, complete sequence.
GenBankAC2328921e-32AC232892.1 Oryza officinalis clone OO__Ba0082D20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009418087.10.0PREDICTED: B3 domain-containing protein Os03g0120900-like
SwissprotQ8LMR91e-37Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLM0U1I50.0M0U1I5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P18780_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.16e-35B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]