PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P19630_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family CO-like
Protein Properties Length: 333aa    MW: 35145.3 Da    PI: 6.6618
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P19630_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.54.8e-071859439
               zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                           r+C+ ++   + l+C+ +  +lC  C    H+       H++
  GSMUA_Achr9P19630_001 18 RRCDSCKVAAALLYCRADAAYLCGGCDARVHEAnrlpsgHER 59
                           89*****999******************99965667777765 PP
2zf-B_box28.14.3e-0960105342
               zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                             + C+ +e+ ++   C+ +   lCe+C   +H+       H++vp+
  GSMUA_Achr9P19630_001  60 VWLCAVCEQAPAVVTCKADAAALCESCDADIHSAnplarrHERVPI 105
                            689*****************************66899999*99997 PP
3CCT68.22.2e-23258301144
                    CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                            Rea+++RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++
  GSMUA_Achr9P19630_001 258 REARVMRYREKRKSRRFEKTIRYASRKAYAETRPRIKGRFAKRK 301
                            9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.7831562IPR000315B-box-type zinc finger
SMARTSM003362.1E-111562IPR000315B-box-type zinc finger
CDDcd000215.93E-71862No hitNo description
PfamPF006438.1E-61860IPR000315B-box-type zinc finger
PROSITE profilePS5011910.59458105IPR000315B-box-type zinc finger
PfamPF006433.7E-760105IPR000315B-box-type zinc finger
CDDcd000211.51E-861105No hitNo description
SMARTSM003367.2E-1063105IPR000315B-box-type zinc finger
PfamPF062032.4E-17258300IPR010402CCT domain
PROSITE profilePS5101716.886258300IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MAREAGGKEG YWTGLAARRC DSCKVAAALL YCRADAAYLC GGCDARVHEA NRLPSGHERV  60
WLCAVCEQAP AVVTCKADAA ALCESCDADI HSANPLARRH ERVPIVPFLE PLAAHVKPSS  120
AAAAFPFGAA VCAGDGNNEE DENDAGADAS WILPNLGHAH SKGLTGAPDL KSADYFFSDA  180
AGVNGGAPPL PSFLPPDAGV EIDFSPSEPS YSTHTTFSMS HSASSSEAGV VPDGSGATTD  240
VTNPHGGVPE KAAAQMDREA RVMRYREKRK SRRFEKTIRY ASRKAYAETR PRIKGRFAKR  300
KDIEAEVDRI YSAAAAAAAA LMADTGYGVV PSF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0985793e-43FP098579.1 Phyllostachys edulis cDNA clone: bphylf061d21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009418181.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 3-like
TrEMBLM0U1S00.0M0U1S0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P19630_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.13e-68CONSTANS-like 3