PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P20220_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SBP
Protein Properties Length: 246aa    MW: 26530.5 Da    PI: 8.1084
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P20220_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP52.81e-168394576
                           TTSSEEETTT--SS--S-STTTT-------S- CS
                    SBP 45 qCsrfhelsefDeekrsCrrrLakhnerrrkk 76
                            Cs fh+l efD++krsCrrrLa+hnerrrk+
  GSMUA_Achr9P20220_001  8 FCSLFHQLPEFDQGKRSCRRRLAGHNERRRKP 39
                           6*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114115.221139IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.101.7E-4726IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.46E-14842IPR004333Transcription factor, SBP-box
PfamPF031103.0E-9938IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MVNIFFLFCS LFHQLPEFDQ GKRSCRRRLA GHNERRRKPP PGPYGRFASS FHEQPSGFRS  60
FLMDFSYPNL SSSRRNPTAT AGDGVATNEW HRGLDASPGA VALHGTHRCS QGPAAGTLCS  120
TMEIPKGECL AGVSDSSCAL SLLSTHPWSS SSARNGAPVI PATSIFDSPG TVDSVIPSNY  180
VTSLWGVRDH GGRTSSHKVL RETVEATATV DAHFSGQAEF GLQENGQCLD HSLGSAYGHS  240
GLRMHW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009418241.11e-174PREDICTED: squamosa promoter-binding-like protein 17
TrEMBLM0U1Y10.0M0U1Y1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P20220_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25273787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15270.12e-10squamosa promoter binding protein-like 5