PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P20930_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family DBB
Protein Properties Length: 186aa    MW: 20105.9 Da    PI: 5.2314
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P20930_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.12.8e-06444539
               zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                            C+ + ++e++ fC  +++ lCe C l  H        H++
  GSMUA_Achr9P20930_001  4 LCDVCCKEEASAFCCADETALCEACDLRVHPAnklageHRR 44
                           6**************************99933456667766 PP
2zf-B_box248e-085690437
               zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.H 37
                           ++C+ ++e++  lfC++++  lC+dC ++ H+  H
  GSMUA_Achr9P20930_001 56 PVCDICQENRGFLFCQEDRAILCRDCDVSVHSAnH 90
                           79*****************************6565 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.025147IPR000315B-box-type zinc finger
CDDcd000211.42E-4347No hitNo description
SMARTSM003361.4E-7447IPR000315B-box-type zinc finger
SMARTSM003367.9E-1353100IPR000315B-box-type zinc finger
PROSITE profilePS5011910.26753100IPR000315B-box-type zinc finger
PfamPF006431.1E-65590IPR000315B-box-type zinc finger
CDDcd000215.08E-85688No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MKILCDVCCK EEASAFCCAD ETALCEACDL RVHPANKLAG EHRRLSLSAP SAESHPVCDI  60
CQENRGFLFC QEDRAILCRD CDVSVHSANH LTMKHNRFIL TGVRLSAAPV SSSPSPVPEA  120
TAAKAATKTI MTMNNQTTAL VADVSSPMTF TSSSTTTVTS NISEYLIKMC PGWRVDDLLV  180
DDEGFS
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009418317.11e-136PREDICTED: B-box zinc finger protein 20-like isoform X1
RefseqXP_018673559.11e-136PREDICTED: B-box zinc finger protein 20-like isoform X2
SwissprotQ0IGM74e-52BBX20_ARATH; B-box zinc finger protein 20
TrEMBLM0U2521e-134M0U252_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P20930_0011e-135(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23923679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.12e-46DBB family protein
Publications ? help Back to Top
  1. Wei CQ, et al.
    The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis.
    J Genet Genomics, 2016. 43(9): p. 555-563
    [PMID:27523280]
  2. Thussagunpanit J, et al.
    Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin.
    Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301
    [PMID:27858514]