PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P21360_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family LBD
Protein Properties Length: 224aa    MW: 24498.9 Da    PI: 6.4894
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P21360_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.92.4e-314107199
                 DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                            +C++C+vlr++C ++C ++p++     p++q++++ +++k++G++ +++l++a+p++ ++++++sl+yeA+ r+ +P+yG+vg+++++
  GSMUA_Achr9P21360_001   4 SCNGCRVLRKGCGENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAVPDHLQPAIFRSLLYEACGRIVNPIYGSVGLLWSG 91 
                            6*************************************************************************************** PP

                 DUF260  84 qqqleqlkaelallke 99 
                            ++ql+q+++e++l ++
  GSMUA_Achr9P21360_001  92 NWQLCQTAVEAVLKGA 107
                            **********998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.7663109IPR004883Lateral organ boundaries, LOB
PfamPF031953.3E-254103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCGENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAVPDH  60
LQPAIFRSLL YEACGRIVNP IYGSVGLLWS GNWQLCQTAV EAVLKGAPIV QIPSETAAST  120
PAPPLQACDI RHVFKKPRTA AELHNRNRKG GECRENECMS LADTAEEASH VSQGEPDETE  180
EDELGLELTL GFKPVSWWSR LVLSDRDTKA CTTDLNLAPP SATS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009418372.11e-158PREDICTED: LOB domain-containing protein 40-like
SwissprotQ9M8861e-78LBD41_ARATH; LOB domain-containing protein 41
TrEMBLM0U2951e-165M0U295_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P21360_0011e-166(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.15e-76LOB domain-containing protein 41