PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P21560_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 365aa    MW: 40287 Da    PI: 9.9404
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P21560_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.41.1e-31287345259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                             D y+WrKYGqK++kgs++pr+YY+C+s  gCp+kk+ver+ edp+++++tYegeHnh 
  GSMUA_Achr9P21560_001 287 ADDYSWRKYGQKPIKGSPYPRGYYKCSSMkGCPAKKHVERCVEDPTMLIVTYEGEHNHA 345
                            69************************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.1E-17239284IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.7E-33275346IPR003657WRKY domain
PROSITE profilePS5081129.712281344IPR003657WRKY domain
SuperFamilySSF1182907.85E-27285345IPR003657WRKY domain
SMARTSM007742.3E-38286346IPR003657WRKY domain
PfamPF031065.5E-27288344IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MEGVEEANSA AVVSCHRVLN LLSETEDQTL AFKVLKAETG NAISMFNKVV SMLSNGVGHA  60
RLRRLTNPQQ LHFNHTIFLD SPAVSRAEPF PLLVQFLPRN LLEKPVNELG STAKIPPQIP  120
PRMLLENPAA ATDAASRGTV QAAYSPNPTH LHFLQQQHNS QVFQIQQHMK FQNEMYGSSN  180
SGKNLMFDNS SCTATASSSR SFLSSLSIDG SMGSMDGKAF NLFGGPQLSD SMNWHLNDRR  240
RCSRGGNDGS GKCAKTSRCH CSKKRKLRVK RTIKVPAISN KLGDIPADDY SWRKYGQKPI  300
KGSPYPRGYY KCSSMKGCPA KKHVERCVED PTMLIVTYEG EHNHAKLLTQ SAHILMSVKE  360
PLATS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-22279344771WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009418394.10.0PREDICTED: protein WRKY1-like
SwissprotQ32SG41e-100WRKY1_MAIZE; Protein WRKY1
TrEMBLM0U2B50.0M0U2B5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P21560_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102503242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.14e-85WRKY DNA-binding protein 74