PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P22260_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SBP
Protein Properties Length: 343aa    MW: 36833.4 Da    PI: 8.3829
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P22260_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.11.6e-4074149176
                            --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                    SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                            +CqvegC++dl+ +k y+ rhkvC +hsk+p+v+v+g+eqrfCqqCsrfh+l+efD++krsCrrrLa hn rrrk+
  GSMUA_Achr9P22260_001  74 RCQVEGCNVDLTGVKAYYCRHKVCGMHSKSPKVVVAGIEQRFCQQCSRFHQLHEFDQGKRSCRRRLACHNMRRRKP 149
                            6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.4E-3469136IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.33472149IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.31E-3873154IPR004333Transcription factor, SBP-box
PfamPF031107.2E-3175148IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
METSASSLQS VSGACGSSDS FHGLKFARNG GGGGGGGGSF LEASVYLAPM AAAAPPRKGK  60
GVVQRGQPPP PPPRCQVEGC NVDLTGVKAY YCRHKVCGMH SKSPKVVVAG IEQRFCQQCS  120
RFHQLHEFDQ GKRSCRRRLA CHNMRRRKPP PGTLSSAFHA EDSNGFRGFL VDFTHPKLPA  180
LARDVWQIGQ AGDQALSIQY QCGLGTPSNR GVILMQDPGT EPIFSTSGTL DLAAGSDSSC  240
ALSLLSQPWD STSKVNHQAI SSEGIPIAEP TSKNDCIDSS WGFKGLEGSS SSTSFDARPR  300
QVGQPENSHF SGELELAFLK RQCMGLDPSR RYQHLDDVIH WSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-26751481184squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018673569.10.0PREDICTED: squamosa promoter-binding-like protein 17 isoform X1
TrEMBLM0U2I50.0M0U2I5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P22260_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25273787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.12e-42squamosa promoter binding protein-like 9