PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr9P22650_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C3H

Protein Properties

Length: 99aa MW: 10969.3 Da PI: 6.234

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P22650_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.8	1.2e-10	44	69	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C +G++Ck++H+ GSMUA_Achr9P22650_001 44 PGEPDCLHYLRTGKCGFGSKCKYNHP 69 5789*********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	3.2E-4	43	70	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.882	43	71	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.1E-8	45	69	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.84E-6	48	69	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.8E-4	49	68	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 99 aa Download sequence Send to blast
MLEARIARSS NALPHKLEEA MWQLKIEDGR EAADGQLNPY PDRPGEPDCL HYLRTGKCGF 60 GSKCKYNHPA LGVQNTQFSG ELPQRDGQPD CQVMSAPNS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018686586.1	4e-56	PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X2
Swissprot	Q2R4J4	2e-20	C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBL	M0U2M4	1e-68	M0U2M4_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P22650_001	2e-69	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP25763	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	4e-22	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]