PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr9P22980_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bHLH

Protein Properties

Length: 141aa MW: 16262.6 Da PI: 8.1119

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P22980_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.7	6.5e-06	106	128	7	29
HHHHHHHHHHHHHHHHHHCTSCC CS HLH 7 erErrRRdriNsafeeLrellPk 29 ++Er RR+++N ++ +Lr+++P+ GSMUA_Achr9P22980_001 106 IMERERRKKLNRKLYNLRSVVPN 128 79********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.23E-6	96	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	8.956	99	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.6E-5	106	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MEDRCTIASY DEGEGWRVTT PPLVSVRRLD SRGFIRVQQH AVDQSIRAFL GLMDADPSEY 60 ANYWEIKCLL DAEELCSLGF DETLSGYCNS SSPDMAAHSA LPNTIIMERE RRKKLNRKLY 120 NLRSVVPNMT KCLECRRARR R

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009418562.1	9e-52	PREDICTED: transcription factor bHLH35-like isoform X1
Refseq	XP_018674108.1	9e-52	PREDICTED: transcription factor bHLH35-like isoform X2
Swissprot	Q2HIV9	6e-14	BH035_ARATH; Transcription factor bHLH35
TrEMBL	M0U2Q7	1e-101	M0U2Q7_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P22980_001	1e-101	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1044	38	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57150.1	2e-06	bHLH family protein