PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P23140_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SBP
Protein Properties Length: 416aa    MW: 46186.4 Da    PI: 7.4333
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P23140_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.91.9e-40130206278
                            -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                    SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                            CqvegC++dlseak+yhr+h+vC +hsk+p+vlv+g+e+rfCqqCsrfhelsefD++krsCrrrL++hn+rrrk+++
  GSMUA_Achr9P23140_001 130 CQVEGCNVDLSEAKDYHRKHRVCVTHSKCPKVLVAGQERRFCQQCSRFHELSEFDQKKRSCRRRLSDHNARRRKPRP 206
                            **************************************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.4E-32122191IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.069127204IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.53E-38128209IPR004333Transcription factor, SBP-box
PfamPF031105.2E-31130203IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MRSLMMDWNA NASLLWDWDN HAPFGGNCKL SAAAAGGASS GSELGNGSSS KSTISASFDS  60
SSKAGKEPEF VANPRNHDKN RFLQESDCPP VAALAAGLEE SQIGLKLGKR TYFEDVSAEM  120
THQSAQSTFC QVEGCNVDLS EAKDYHRKHR VCVTHSKCPK VLVAGQERRF CQQCSRFHEL  180
SEFDQKKRSC RRRLSDHNAR RRKPRPNLIT FNSTDFSSSF YDDRHHMNLL WNKTLFGHMR  240
SMASTTIEGS QNDKQTQMRG PWVKSTKELG IDEQLPLPNT QLSNGFFTLY HDVDKLLPLK  300
GTAAEVLNQG SEASAGASNF DGAPDLRRAL SLLSTNAWGS PDPGQPSSIV EFLDTNHHST  360
AEPMMPTLNS SGQFFPGQSL AQQAQLLPFT MHRDDSHPQG VQLQNRDTLF DPRQIH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-261292031084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185202KKRSCRRRLSDHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009418579.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_009418580.10.0PREDICTED: squamosa promoter-binding-like protein 12
RefseqXP_009418581.10.0PREDICTED: squamosa promoter-binding-like protein 12
SwissprotA2YGR59e-91SPL12_ORYSI; Squamosa promoter-binding-like protein 12
TrEMBLM0U2S30.0M0U2S3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P23140_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36973776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.32e-50squamosa promoter binding protein-like 2