PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr9P23320_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

G2-like

Protein Properties

Length: 226aa MW: 26002.1 Da PI: 9.8443

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P23320_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	95.8	3.4e-30	103	154	2	53
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 pr+rWt++LH +Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQk+ GSMUA_Achr9P23320_001 103 PRMRWTTTLHGCFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQKF 154 9**************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.7E-16	100	158	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.4E-27	101	155	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.8E-23	103	156	IPR006447	Myb domain, plants
Pfam	PF00249	1.0E-5	104	153	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MDIFPSQPDL SLRISPPNTK PISDWRKQDG DTELGGVPVY QQPPSFPLLP PDHHHHHHHH 60 QQQQHLYESS SSTDFDRSAP TQSLSRSSNS PSRIPIKRRM RAPRMRWTTT LHGCFVHAVE 120 LLGGHERATP KSVLELMDVK DLTLAHVKSH LQKFFRLTSS KFMNMYRTVK NTQRPTVASG 180 RSDGFQNEWS AEISDERLLK IHDLHTSEFS THHEINQIGL WNSSSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-15	104	154	4	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-15	104	154	4	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-15	104	154	4	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-15	104	154	4	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-15	104	154	4	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-15	104	154	4	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-15	104	154	4	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-15	104	154	4	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018686769.1	1e-110	PREDICTED: probable transcription factor KAN2 isoform X1
Swissprot	Q9C616	1e-37	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	M0U2U1	1e-166	M0U2U1_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P23320_001	1e-166	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4721	36	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17695.1	2e-37	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]