PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P23580_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 593aa    MW: 65444 Da    PI: 4.5901
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P23580_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM34.18.2e-112154135
                    NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevik 35
                           l+pGfrFhPtdeelv +yLk+kv+g++l++ +vi+
  GSMUA_Achr9P23580_001 21 LAPGFRFHPTDEELVGYYLKRKVSGRPLRI-DVIA 54
                           579************************998.6665 PP
2NAM99.74.1e-315512657129
                    NAM  57 ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                            ewyfF++ d+ky++ +r+nrat++gyWk+tgkd++v++ +g++vg+kktLvf++grap+g +t+Wvmheyrle
  GSMUA_Achr9P23580_001  55 EWYFFCPVDRKYPNRSRTNRATARGYWKTTGKDRPVHR-RGRVVGMKKTLVFHDGRAPHGARTNWVMHEYRLE 126
                            9************************************9.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100535.9631148IPR003441NAC domain
SuperFamilySSF1019411.96E-5219148IPR003441NAC domain
PfamPF023659.0E-2923125IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MHGVAASCST PQPPPPAASL LAPGFRFHPT DEELVGYYLK RKVSGRPLRI DVIAEWYFFC  60
PVDRKYPNRS RTNRATARGY WKTTGKDRPV HRRGRVVGMK KTLVFHDGRA PHGARTNWVM  120
HEYRLEDDEL THSGIPQDAY VVCRIFQKSG AGPRNGAQYG APFIEEEWEE EDEKAADGLS  180
ATPFGGDAEI NEALNSEFME INDLLQSKHM GHQNGRAALC LEDTDGQGSD SHPVDPIHIL  240
DVFPEEIRND QNLTDKVLDC IYEPNLQSSR TLTGGSGEQI ILNDIAYSYP VQLEEFVQLN  300
DLEDDSVNIS YPVGEGFVSC PLLECHASFV NRVHYGLEDD EFFDAIIQSA EPVVDNFNLQ  360
ATDPLNTLSG PHSSNFDAEV MAYFDALDDG LENDIFSSFE ILEHKDSSAS SQFISEVDGG  420
DGTTNMAIPE LLYTNVGGNL LPALPLTDNQ FVNEYENIPV APDIKQNVNG KRKITSHLVN  480
MLGSISAPPA FAAEYPASLE STHVTVGMVD VHGLSATSST GHCSLQKNGN GDLLLSYSIA  540
ENLGRKKSSG FQPFRKIQDW TVSFLLRGGC YPFFLSALVL TISYKVGMCI YGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-422114815168Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009418630.10.0PREDICTED: NAC domain-containing protein 53 isoform X2
TrEMBLM0U2W50.0M0U2W5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P23580_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP71073650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.12e-65NAC domain containing protein 2