PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr9P24180_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

MYB

Protein Properties

Length: 173aa MW: 19741.7 Da PI: 9.6381

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P24180_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.1	3.6e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++ +G g+W++ ++ g+ R++k+c++rw +yl GSMUA_Achr9P24180_001 14 KGAWTKEEDDRLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	61.1	2.3e-19	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++ GSMUA_Achr9P24180_001 67 RGNFTEEEDELIIKLHSLLGNK-WSLIAGKLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.1E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.76	9	61	IPR017930	Myb domain
SMART	SM00717	1.9E-13	13	63	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.88E-30	13	108	IPR009057	Homeodomain-like
Pfam	PF00249	2.0E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.32E-10	16	61	No hit	No description
PROSITE profile	PS51294	29.191	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.6E-28	65	116	IPR009057	Homeodomain-like
SMART	SM00717	9.8E-18	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.5E-17	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	3.40E-13	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MGRSPCCERA HTNKGAWTKE EDDRLIAYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGKLPGRT DNEIKNYWNT HIRKKLLSMG 120 VDPATHRPIH DSAATITAET SARRQHHRPP KCPDLNLELC ISPPFQQAPL HPI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-29	13	116	26	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ560978	1e-112	FJ560978.1 Saccharum hybrid cultivar Co 86032 MYB transcription factor (MYB6) pseudogene mRNA, complete sequence.
GenBank	HF679410	1e-112	HF679410.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB4 protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018673816.1	1e-122	PREDICTED: myb-related protein Zm38-like
Swissprot	P81393	2e-95	MYB08_ANTMA; Myb-related protein 308
TrEMBL	M0U325	1e-125	M0U325_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P24180_001	1e-126	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	4e-91	myb domain protein 4

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]