PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P24360_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family BBR-BPC
Protein Properties Length: 174aa    MW: 19537.4 Da    PI: 9.9103
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P24360_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind2089.7e-6478174205301
              GAGA_bind 205 estlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkH 292
                            e ++P+PvCsCtG+lrqCY+WG  GWqS+CCt ++S+yPLPv++++r+aR++grKmS++af+klL  La +Gydls +vDLk+hWAkH
  GSMUA_Achr9P24360_001  78 ELSVPAPVCSCTGKLRQCYRWGDFGWQSSCCTSSLSMYPLPVMPNKRHARMGGRKMSGSAFRKLLRCLAVDGYDLSMAVDLKNHWAKH 165
                            6689************************************************************************************ PP

              GAGA_bind 293 Gtnkfvtir 301
                            Gtn+++tir
  GSMUA_Achr9P24360_001 166 GTNRYITIR 174
                            ********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012263.5E-471174IPR010409GAGA-binding transcriptional activator
PfamPF062175.5E-6079174IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MALKERDAAF AKRDNAIMER DNAIAALRYA REKSYNGYNE QGCCSCTQAT PHKMSSKSPR  60
KIKEGHGDDS NKLFSANELS VPAPVCSCTG KLRQCYRWGD FGWQSSCCTS SLSMYPLPVM  120
PNKRHARMGG RKMSGSAFRK LLRCLAVDGY DLSMAVDLKN HWAKHGTNRY ITIR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018686608.15e-84PREDICTED: barley B recombinant-like protein D
RefseqXP_018686609.15e-84PREDICTED: barley B recombinant-like protein D
RefseqXP_018686610.15e-84PREDICTED: barley B recombinant-like protein D
RefseqXP_018686611.15e-84PREDICTED: barley B recombinant-like protein D
RefseqXP_018686612.15e-84PREDICTED: barley B recombinant-like protein D
RefseqXP_018686613.15e-84PREDICTED: barley B recombinant-like protein D
RefseqXP_018686614.15e-84PREDICTED: barley B recombinant-like protein D
SwissprotF4JUI38e-56BPC5_ARATH; Protein BASIC PENTACYSTEINE5
TrEMBLM0U3431e-128M0U343_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P24360_0011e-129(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62263756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38910.12e-58basic pentacysteine 5