PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P24670_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 295aa    MW: 32746.6 Da    PI: 6.7924
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P24670_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.22.2e-061872241254
                            HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            R +++ +++  L++l+ +      +K + a++L++A+eYIk L
  GSMUA_Achr9P24670_001 187 RKEKLGDRITALQQLVSPF-----GKTDTASVLQEAIEYIKFL 224
                            677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.398175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.76E-7185228No hitNo description
Gene3DG3DSA:4.10.280.107.1E-9185232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-12185239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0018186230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MPQEDLGSRP TGGESSTSNP YGDMNQNLLL QQQHHLSDVG GGYQIITPAS YASSSMMLQD  60
LLESETKQQQ FIYDGRVRNQ YQSPMSADGG SSDELWQPSW LSHLLKSSLS NNTPLWNASA  120
SDMRPVFRSP TPSKYPQWIM PSFSKQMESS GGDRDSCSSS TKKTGSEAAT KKPRIETHSP  180
LPTFKVRKEK LGDRITALQQ LVSPFGKTDT ASVLQEAIEY IKFLHDQVGV LSSPYFKNGQ  240
PMKPKQIPEE SKDCDEPKQD LRSRGLCLVP VTSTYPVASE TTTDFWHPTL GGTFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009418756.10.0PREDICTED: transcription factor bHLH112 isoform X1
SwissprotQ94JL32e-53BH112_ARATH; Transcription factor bHLH112
TrEMBLM0U3740.0M0U374_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P24670_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29703464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.34e-56bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HC, et al.
    The function of OsbHLH068 is partially redundant with its homolog, AtbHLH112, in the regulation of the salt stress response but has opposite functions to control flowering in Arabidopsis.
    Plant Mol. Biol., 2017. 94(4-5): p. 531-548
    [PMID:28631168]