PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P24710_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRAS
Protein Properties Length: 583aa    MW: 65343 Da    PI: 9.4098
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P24710_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS47.62.9e-15320408293
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                            ++lL+ecA+a+s+++ e+ + l+ + +  +s +g+p+qRl ay++e+L ar  +s++++y+ l++++ +   s+e l+++ ++++++P
  GSMUA_Achr9P24710_001 320 KQLLIECAKALSENKIEEFELLVGKAHRAVSISGEPLQRLGAYMLEGLVARHESSGTNIYHGLRSRKPE---SKELLSYMGILYDICP 404
                            689***************************************************************999...99************** PP

                   GRAS  90 ilkf 93 
                            ++k 
  GSMUA_Achr9P24710_001 405 YFKT 408
                            *996 PP
2GRAS216.71.2e-66407582197373
                   GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                            k+gEalaVn+ lqlh+++desv+++++rd +L++vk+lsPkv ++veqe+++n+++Fl+rf+e+l+yysa+f+s++a+l r+s+eri 
  GSMUA_Achr9P24710_001 407 KTGEALAVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLSPKVTTLVEQESNTNTTPFLTRFIETLDYYSAMFESIDATLKRDSKERID 494
                            78************************************************************************************** PP

                   GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372
                            vE+++l+++ivn++ace+++r+erhe l+kWr+rl++aGFkp+pls+++++ +k+ll+ ++++ y+  e++g+l+lgWk+r+L+s+Sa
  GSMUA_Achr9P24710_001 495 VEQHCLAKDIVNIIACEEKDRVERHELLGKWRSRLSMAGFKPYPLSSYVNSVIKTLLSYYSNK-YTAVEKDGALLLGWKTRNLISASA 581
                            **********************************************************99966.************************ PP

                   GRAS 373 W 373
                            W
  GSMUA_Achr9P24710_001 582 W 582
                            * PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098526.518407564IPR005202Transcription factor GRAS
PfamPF035144.3E-64407582IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MITKPSFLAC VTVYTRSIAY VVYPSNATTA SVAVGPTTSV HSSPGRMRVG VKGIIITPVE  60
YANLTCRLPP KEGAHDHVSP CLTRTREDGR LGWSQSGQKR RNIRESDPPP SNVHPTVARD  120
TSGHLLTPPA WESEDIYRES YSLQNRSYTE WTFDSIKSAL GNSLNSPTSS RFEFFPLLSN  180
SQEQNSFTKP SRVSKSGLDS IQAVPSSSSR DPRTIRLTYA VSSQSMKHTL QELGIVLMAP  240
DTVKPTTSTD PELNENKQPQ LTKQRSRTWT HKTQLESPTI PQPRYTSGGH MNISHEARPG  300
KRVREVRKQS GTDVKQPDVK QLLIECAKAL SENKIEEFEL LVGKAHRAVS ISGEPLQRLG  360
AYMLEGLVAR HESSGTNIYH GLRSRKPESK ELLSYMGILY DICPYFKTGE ALAVNFTLQL  420
HHTPDESVDV NNPRDGLLRM VKGLSPKVTT LVEQESNTNT TPFLTRFIET LDYYSAMFES  480
IDATLKRDSK ERIDVEQHCL AKDIVNIIAC EEKDRVERHE LLGKWRSRLS MAGFKPYPLS  540
SYVNSVIKTL LSYYSNKYTA VEKDGALLLG WKTRNLISAS AWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-29410583201375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018674099.10.0PREDICTED: chitin-inducible gibberellin-responsive protein 1-like
SwissprotQ69VG11e-101CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLM0U3780.0M0U378_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P24710_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92213141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-83GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]