PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P24840_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HB-other
Protein Properties Length: 411aa    MW: 47064.9 Da    PI: 10.2214
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P24840_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox421.6e-131767757
                           --HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
               Homeobox  7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                            t++ql+ Le+++ +++yp ++++ee A+ l+Lt +q+++WF  rR ke++
  GSMUA_Achr9P24840_001 17 KTTNQLQSLEKFYSEEKYPEQTKMEEYASLLNLTYNQIRIWFVERRRKERR 67
                           589**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.84E-14771IPR009057Homeodomain-like
PROSITE profilePS5007115.03868IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-141167IPR009057Homeodomain-like
SMARTSM003891.8E-111372IPR001356Homeobox domain
CDDcd000861.21E-101669No hitNo description
PfamPF000467.4E-111767IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MGIDASNGQA DNQTKKKTTN QLQSLEKFYS EEKYPEQTKM EEYASLLNLT YNQIRIWFVE  60
RRRKERRDNE TMTSNVESFL NGSHGRVAGI TSRCAIERMY QLVKQKARHK VLQRLMKSHS  120
VGRINHTDKD QVLLQILLSK DYILKKIFRK DGPTLGIEFD APPGNAICYH TELQEPEPCH  180
GKLQTPKRRK ALVSHILATR SLPESDLCTR KHGMGKGLMT VWRATCPSSQ ELPTGVNYTD  240
RSASWKPLRS TASRRAPSSH ASKQLQQRES RMRQSSQRKS QERRKPSTRI GKVSSGKDMN  300
QKEPCLKDCK LFLDKFSEQS SELIDLVDDE ELELKELQVG SNPLRCSAHL ASNGRHGCPL  360
CKDLLARFPP QTIKMKQLFS TRPWDSSPEL VKKLFKVTAL CSDSYFLTSL H
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16067RRRKERRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009418770.10.0PREDICTED: homeobox-DDT domain protein RLT3
TrEMBLM0U3910.0M0U391_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P24840_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45563350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12750.13e-37Homeodomain-like transcriptional regulator