PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr9P25010_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Dof

Protein Properties

Length: 306aa MW: 32956.3 Da PI: 8.5553

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P25010_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122	2e-38	26	85	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ l+cprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+r+nk+++ GSMUA_Achr9P25010_001 26 QAVLRCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRRNKRAK 85 67789****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-26	23	78	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.5E-33	27	83	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.45	29	83	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	31	67	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MIHASSTTSG AAARVMDKPS AQDQSQAVLR CPRCDSSNTK FCYYNNYSLS QPRHFCKACK 60 RYWTRGGTLR NVPVGGGCRR NKRAKKPAAA PMAPPNHPHR RPLLPPDPVP SLLVQRPSPS 120 HLDAAALYAL QTASSSSDMS LTLPIIMNSL HIPSCTTAFD LQPHLGAPGL GLPSNPQREN 180 EYHLGELQPL SPVDDYPLFG SSLPSASQLA SSIKQLKQVA DYQAILPFDE LQASGIGGSL 240 NAMTKEVKWE GQTNNLMNSC TDWQIPSVNS LDNFGPAAAT YWNVVIGGTG GWPDGMNYGS 300 SVTPLI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018686793.1	0.0	PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBL	M0U3A8	0.0	M0U3A8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P25010_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8895	30	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28810.2	1e-30	Dof family protein