PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P25560_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 353aa    MW: 37966.1 Da    PI: 6.3546
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P25560_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH291.9e-09203247554
                            HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            h+++Er+RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  GSMUA_Achr9P25560_001 203 HSIAERQRRERIAERLRALQELVPNT-----NKTDRAAMLDEILDYVKFL 247
                            99***********************7.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-15196257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.82E-11196252No hitNo description
PROSITE profilePS5088816.164198247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-14200258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-7203247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-10204253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MASHPPPPPS EGLGDDFLEQ ILSMPSSFGG GDDASLAAGM ALHRSSGDGS SVAARGGGAF  60
PLGLSLEQGS STGKRLFEGQ NTKMVSASSL LFRLSGVGGE FELGSSLGVA VEQERDSMQL  120
AGLFPPGFGH IHPHQIRSNP PPQVRWLLET LDFVYSISDL FFLSIVLQAF HGQVKQGGVT  180
TVPQPPAPRP KVRARRGQAT DPHSIAERQR RERIAERLRA LQELVPNTNK TDRAAMLDEI  240
LDYVKFLRLQ VKVLSMSRLG GAGAVAQLVA DIPVSVEGET SEGGSTQHIW EKWSTDGTER  300
QVAKLMEEDI GAAMQFLQSK SLCMMPISLA MAILDTHHQS ESKTVKPEPN TPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207212RQRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009418924.10.0PREDICTED: transcription factor UNE12 isoform X1
SwissprotO227682e-76UNE12_ARATH; Transcription factor UNE12
TrEMBLM0U3G30.0M0U3G3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P25560_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.36e-55bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]