PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P25670_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family CPP
Protein Properties Length: 829aa    MW: 91669.2 Da    PI: 6.9479
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P25670_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR51.52e-16513550340
                    TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                            +k+CnCkkskClk+YCeCfaag++Cse C+C++C+Nk 
  GSMUA_Achr9P25670_001 513 CKRCNCKKSKCLKLYCECFAAGVYCSEPCSCQGCFNKP 550
                            89**********************************96 PP
2TCR50.15.6e-16597635139
                    TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                            ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  GSMUA_Achr9P25670_001 597 RHKRGCNCKKSNCLKKYCECYQFGVGCSISCRCEGCKNA 635
                            589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.4E-18511552IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.372512637IPR005172CRC domain
PfamPF036385.2E-12514549IPR005172CRC domain
SMARTSM011146.1E-16597638IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.4E-11599635IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 829 aa     Download sequence    Send to blast
MAKGCELWWG RTRERERERE REREILSALQ DSPVFNFINN LSPIRPVKST DSAHIAHTYQ  60
SLNFASLSSI FSSPHANPPR VTRNLTGPPS TDLSRREEFL ENVGESSLCS EVSDVVRPSR  120
FTATTQDNCN ITCSFNEAAI DPPEHCPILP STLPQSSQYD SGSPDHNTKM KFALDLGHAP  180
AELVPFVQND IDRRKILFTM ETGVQENHPL ELNKDEVEGV QENLIFDDAE DMLIFDSFME  240
PVVHERGGEE VIGNDVTSFV SLLSNYTENV DKLQKTQPDI PHRPCVQDIT QDLQLKCSED  300
SRKKKPETEH GKKMLSVTHQ NQLHPLSSSM EVPTTISLST LTTVDDSKQH GIHRRCLVFE  360
VAGISQRNIY GDSSRNQSTT LPSKSRNIFD ANLKPAISSS LCAFPGIGLH LNALATTSMD  420
RMVKNEKLAP GKQLITMPCP IDPFASATTG RNSPQKSLAI EADLLTSGEI EDLQVTYDAA  480
AKDISLGNYE ELSQGSPKKK RCKSENGGES EGCKRCNCKK SKCLKLYCEC FAAGVYCSEP  540
CSCQGCFNKP IHEETVLATR KQIESRNPLA FAPKVIRTSE AGVEMRDDAN KTPASTRHKR  600
GCNCKKSNCL KKYCECYQFG VGCSISCRCE GCKNAFGRKE GVGEIEHVEE ETDAYDKEKE  660
GLDDGPQIAK VQIDERNSFG NILPITPHQS CRRSIKLPSS SSAKPPRVSK LSIGRSPGLY  720
GSHILWKSEI LLSQDKSENK INANFEDDTP SILKSNASPT TGIKIASPNR KRVSPPHIGV  780
GLSPPNRRSC RKLILKSIPP FPSLDNDDAS TEHPLSYSRN SSFSSSTVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1651463412120Protein lin-54 homolog
5fd3_B1e-1651463412120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11222RERERERERER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009418939.10.0PREDICTED: protein tesmin/TSO1-like CXC 2
TrEMBLM0U3H40.0M0U3H4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P25670_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61473447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.11e-110Tesmin/TSO1-like CXC domain-containing protein