PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr9P26300_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HD-ZIP

Protein Properties

Length: 258aa MW: 29150.8 Da PI: 8.1677

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P26300_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.7	9.3e-19	121	174	2	55
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 rk+ ++tkeq Le+ F++++ ++ ++++ LAk+l+L rqV vWFqNrRa++ GSMUA_Achr9P26300_001 121 RKKLRLTKEQSSLLEDKFKEHSSLNPKQKQALAKQLNLRPRQVEVWFQNRRARW 174 788899***********************************************9 PP
2	HD-ZIP_I/II	110.8	9e-36	121	210	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARt.ktkqlEkdyeaLkraydalkeenerLekeveeL 87 +kk+rl+keq++lLE++F+e++ L+p++K++la++L+l+prqv+vWFqnrRAR+ k+k++E++ e+L+r++++l+ee++rL+ke ++L GSMUA_Achr9P26300_001 121 RKKLRLTKEQSSLLEDKFKEHSSLNPKQKQALAKQLNLRPRQVEVWFQNRRARWtKLKKTEVELEFLRRCCETLTEEKRRLQKELQDL 208 69*************************************************8799****************************9 PP HD-ZIP_I/II 88 re 89 ++ GSMUA_Achr9P26300_001 209 EN 210 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.42E-18	117	178	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.297	117	177	IPR001356	Homeobox domain
SMART	SM00389	2.5E-16	119	181	IPR001356	Homeobox domain
Pfam	PF00046	4.8E-16	121	174	IPR001356	Homeobox domain
CDD	cd00086	1.03E-16	121	178	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.1E-17	126	174	IPR009057	Homeodomain-like
SMART	SM00340	9.9E-12	178	222	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MAMDDHDRDD TPHTGLSLTL SYDGRSDLSI GSRPHSSSGL ELQRSSSTPK ALEPSLTLAL 60 PGDVCASVEV EMGRDIGSRH SPPPQSHHPC KIKREDDVRS EEVEKVSSRI SDEEEEDSGA 120 RKKLRLTKEQ SSLLEDKFKE HSSLNPKQKQ ALAKQLNLRP RQVEVWFQNR RARWTKLKKT 180 EVELEFLRRC CETLTEEKRR LQKELQDLEN SHKLSATRHM QIPAMCPSCK KVIGGAETGS 240 PLPASTPRFF NPFAHHAA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009419027.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT22
Swissprot	P46604	5e-59	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	M0U3N7	0.0	M0U3N7_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P26300_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2055	36	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	1e-54	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]