PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr9P26570_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

G2-like

Protein Properties

Length: 392aa MW: 43146.6 Da PI: 6.9372

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P26570_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.6	2.1e-31	262	317	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W++eLH+rFv a+eqLGG+++AtPk+i++lmkv+gLt+++vkSHLQkYRl+ GSMUA_Achr9P26570_001 262 KARRCWSSELHRRFVLALEQLGGPQVATPKQIRDLMKVDGLTNDEVKSHLQKYRLH 317 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.2	259	319	IPR017930	Myb domain
SuperFamily	SSF46689	9.85E-17	260	320	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-28	261	321	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.3E-26	262	317	IPR006447	Myb domain, plants
Pfam	PF00249	1.0E-5	264	315	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MGSAVADVVL DLNLCAVRAV GGSLKEAAAL ESGDGRVAKL EEYVRSLEEE RRKIEAFKRE 60 LPLCMILLTD LIEGLKQELK QCRDGRPTHV FEEVIPVKRK REDEGGLKPE ADCKDKMSWM 120 SSAQLWSVNS REDKSDGDRN VTEERSGSRD QREEKEKEDN LFLESTSRNG RGAFVPFKGI 180 SGPKIKSKEE TKTTVMLPDL SLLSPAGNSA SSPVSATVED HPVGGSGSKG VGRAPVSAPT 240 ISGAHLSLQV QQQQQQQQLP RKARRCWSSE LHRRFVLALE QLGGPQVATP KQIRDLMKVD 300 GLTNDEVKSH LQKYRLHTRK MPNATSAISQ PVMVVRGLCV PDENYTTLPR SASHSGSPES 360 PLQLANSNHE ISANAGDSCE EVDEKSENYN LR

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MGSAVADVVL DLNLCAVRAV GGSLKEAAAL ESGDGRVAKL EEYVRSLEEE RRKIEAFKRE  60
LPLCMILLTD LIEGLKQELK QCRDGRPTHV FEEVIPVKRK REDEGGLKPE ADCKDKMSWM  120
SSAQLWSVNS REDKSDGDRN VTEERSGSRD QREEKEKEDN LFLESTSRNG RGAFVPFKGI  180
SGPKIKSKEE TKTTVMLPDL SLLSPAGNSA SSPVSATVED HPVGGSGSKG VGRAPVSAPT  240
ISGAHLSLQV QQQQQQQQLP RKARRCWSSE LHRRFVLALE QLGGPQVATP KQIRDLMKVD  300
GLTNDEVKSH LQKYRLHTRK MPNATSAISQ PVMVVRGLCV PDENYTTLPR SASHSGSPES  360
PLQLANSNHE ISANAGDSCE EVDEKSENYN LR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009419059.1	0.0	PREDICTED: myb family transcription factor EFM isoform X1
TrEMBL	M0U3R4	0.0	M0U3R4_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P26570_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1817	37	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	4e-56	G2-like family protein