PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr9P27380_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

MYB

Protein Properties

Length: 260aa MW: 28854.6 Da PI: 7.1385

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr9P27380_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.2	6.1e-16	15	61	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g+WT++Ed lv ++k +G g W++ +++ g++R++k+c++rw++yl GSMUA_Achr9P27380_001 15 GAWTAQEDHVLVSYIKVHGDGKWRSLPKRAGLKRCGKSCRLRWLNYL 61 89*******************************************97 PP
2	Myb_DNA-binding	52.3	1.3e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + +E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ GSMUA_Achr9P27380_001 67 RGNISDDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111 7899****************.*****.**********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.498	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.15E-27	12	108	IPR009057	Homeodomain-like
SMART	SM00717	6.5E-10	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-14	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-22	15	68	IPR009057	Homeodomain-like
CDD	cd00167	1.04E-8	16	61	No hit	No description
PROSITE profile	PS51294	24.976	62	116	IPR017930	Myb domain
SMART	SM00717	1.3E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-14	67	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.0E-24	69	116	IPR009057	Homeodomain-like
CDD	cd00167	2.15E-12	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MGRKPCCVRE GLRTGAWTAQ EDHVLVSYIK VHGDGKWRSL PKRAGLKRCG KSCRLRWLNY 60 LRPGIKRGNI SDDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TLGKKVHGNA 120 SQTKPILNVS LADSTTAGTG AAGDASVVQT KAQRCTKTFF HQDQGLLPAP IDHQRHESTT 180 AEPTSPSKAP QSDVSLDGVP LVPGEEDEAV CFSMSPNSTL LLDMPSMEDW IGSDCFQPDI 240 DFSFTSVASF FDTEEWLNWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-25	12	116	5	108	B-MYB
1h8a_C	2e-25	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009419136.1	0.0	PREDICTED: anthocyanin regulatory C1 protein-like
TrEMBL	M0U3Z5	0.0	M0U3Z5_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr9P27380_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35550.1	3e-61	MYB family protein