PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P27510_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family G2-like
Protein Properties Length: 135aa    MW: 15431.6 Da    PI: 10.5226
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P27510_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.72.3e-32458155
                G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                           kprl+Wt++LH+ Fv+av+qLGG +kAtPk ++++m+v+gLtl+h+kSHLQkYRl
  GSMUA_Achr9P27510_001  4 KPRLKWTSQLHQLFVDAVSQLGGVDKATPKYVMRVMGVPGLTLHHLKSHLQKYRL 58
                           79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.45161IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.6E-31262IPR009057Homeodomain-like
SuperFamilySSF466899.68E-17361IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-24459IPR006447Myb domain, plants
PfamPF002492.3E-7657IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MDSKPRLKWT SQLHQLFVDA VSQLGGVDKA TPKYVMRVMG VPGLTLHHLK SHLQKYRLAK  60
NRESSIPRGN RRRDAKVTHR WTSEDATTQD EANEAPPQCE TTLKMQMAVQ RKLQEQIEAS  120
ALGDTRSHGF QLNWV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-20362160Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-20362160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-20362160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-20362160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-20362160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-20362160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-20362160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-20362160Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009419148.13e-84PREDICTED: myb family transcription factor PHL8 isoform X2
SwissprotF4I2741e-30PHL8_ARATH; Myb family transcription factor PHL8
SwissprotQ9SQQ93e-30PHL9_ARATH; Myb-related protein 2
TrEMBLM0U4087e-97M0U408_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P27510_0011e-97(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16835911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.15e-33G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]