PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P27560_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 257aa    MW: 29528.6 Da    PI: 8.9215
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P27560_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix65.41.3e-20299183
               trihelix  1 rWtkqevlaLiearr.............emeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkik 65
                           +Wt++ v++Li ++              +                     +kk++W+ vs+ m e+g+ +sp+qC++k+++lnkryk+++
  GSMUA_Achr9P27560_001  2 KWTDEIVRLLISVVAyvgdhddgaletfD--------GssaakrkhgatlQKKGKWKTVSRLMLEKGCYVSPQQCEDKFNDLNKRYKRLN 83
                           7*************966655554444330........0334445566666**************************************** PP

               trihelix 66 egekkrtsessstcpyfd 83
                           e+ +++t  ++  + +f+
  GSMUA_Achr9P27560_001 84 EILGRGTTCQV--WEWFK 99
                           *****965555..88886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.6E-19296No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MKWTDEIVRL LISVVAYVGD HDDGALETFD GSSAAKRKHG ATLQKKGKWK TVSRLMLEKG  60
CYVSPQQCED KFNDLNKRYK RLNEILGRGT TCQVWEWFKR RALQLEEERV DVEAEALELE  120
KRHFKWQRFR SKKDWELERL RLENDRLRLE NECMILQVRQ KELELDIRWS RDPLDSSGRR  180
MEGEQPPDLI KSNENITLST PHPPLGAVLA GKPNLPSFPP PDRVQGGRRS TTGIRARGGI  240
LSDGASLLAD GAHLTSE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009419153.12e-59PREDICTED: uncharacterized protein LOC103999204
TrEMBLM0U4130.0M0U413_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P27560_0010.0(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.17e-32sequence-specific DNA binding transcription factors