PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P27660_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SBP
Protein Properties Length: 369aa    MW: 39364 Da    PI: 8.1978
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P27660_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP137.24.8e-4378153176
                            --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                    SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                            +CqvegC+adl+ +k y+ rhkvC +hskap+v+v+gleqrfCqqCsrfh l efD++krsCrrrLa+hnerrrk+
  GSMUA_Achr9P27660_001  78 RCQVEGCNADLTGVKAYYCRHKVCGMHSKAPKVIVAGLEQRFCQQCSRFHLLPEFDQGKRSCRRRLAGHNERRRKP 153
                            6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.3E-3572140IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.47976153IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.76E-4177157IPR004333Transcription factor, SBP-box
PfamPF031107.9E-3379152IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MDERCLETTG ASTGSGDTLH GLKFGQKIYF EDGGGGGGSG SGSSSKPPLA PIKEGAAPSP  60
PGKKGKGVAQ GGLQQPPRCQ VEGCNADLTG VKAYYCRHKV CGMHSKAPKV IVAGLEQRFC  120
QQCSRFHLLP EFDQGKRSCR RRLAGHNERR RKPPPGTFAS CYGRFASSFH EEPGRFKSFL  180
VDFSHPKFSS SARDVWPTAR AGDRVVTDEW HGVLDAPTHA ALLRTCPCYQ GPLAGNFCSP  240
VELPPGEVLA GVSDSSCALS LLSTHSWSSN SARNLSVNPA NSTFVVPPPS TRSVIPGNST  300
TTSWGLRSHG GRTIPHEIQH EMGLAEETEA SDAHFSHQVG FAPHENGQCL DHGSGRACDH  360
SVPGMHWSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-30791521184squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009419165.10.0PREDICTED: squamosa promoter-binding-like protein 14 isoform X1
TrEMBLM0U4230.0M0U423_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P27660_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25273787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.13e-47squamosa promoter binding protein-like 9