PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr9P27780_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 415aa    MW: 45507.9 Da    PI: 8.4882
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr9P27780_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.61.9e-12337382655
                            HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +++Er RR +i +++ +L+e++P+     +k  + a++L +Av+YIk+Lq
  GSMUA_Achr9P27780_001 337 SIAERVRRTKISERMKKLQEVVPNM----DKQTNTADMLNLAVDYIKDLQ 382
                            689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.837331381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-16334395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.11E-12335386No hitNo description
Gene3DG3DSA:4.10.280.104.7E-15336390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9337382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.6E-14337387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MYGAPPATAT SKDLDLGYPP AAPLGGHRKE EPESAGLHVL LHHPPAQQEQ VSPGLLRFRS  60
APSSLFEELC EDFLPARPYG AETDEPSVVD TVDCQRRPQF WRPPPSGEKV SPQHKVASSS  120
SLPMTHHHTQ QPLQMPNHSL SDISYRTMGS MLAEVEQHEN GGGRTFANLT RQSSSPAIVS  180
SHNGYPMMRD LRGFRNEGLP PMGEAAKRFR GHQLSLGKRQ SSLMSRISET GSEEFGRGSH  240
EESGCYMPGW DETSLLSANS FAGTRKGSEG EDKTGAGLNH SEPQKGEVRN HVSGVTHQLG  300
LPKTSSEMAA VENFLRFQDA VPCRIRAKRG CATHPRSIAE RVRRTKISER MKKLQEVVPN  360
MDKQTNTADM LNLAVDYIKD LQKQVKTLTE GRASCSCLSS NQNSYLNSKS GARGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009419179.10.0PREDICTED: transcription factor bHLH130 isoform X1
TrEMBLM0U4350.0M0U435_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr9P27780_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.16e-60bHLH family protein